Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2614 ATGGGATGCGTTTGTGGCAAGTTTTCTCCCCCTCGCAAGGCCGAGAGGCCGAAACGGCAAGTGAAGAGAGTTGTGAGCCAGAAGGGTTCGAGGACACATTCCTCTAAGCGTGTGGGAGAGAGGGAGAGTCAGAGACAGAGGGTGAGTGTGCGTGTTAATAAGGATTCAGCTGCTAAGAGGGATGGAAATGCTGCTGAAGGTGTTGTTGGAGgtggagaaaaggaaaaaccGGTTGCTAGAGAAGAGAAGGGTAAGGTATGGGACGATGTTgctaaagaaaatgagagaaaatttgGGGAGAAAAAGATGGCCAAATATGAATTTGTGGACGGGTGGCCCAAGTGGTTAGTCGATAACATCCCCGCAAATGTTTTGGCTAATATTGTTCCCAAGAGCGCTGATTCCTATGTAAAACTTGCCAAGATAGGACGTGGAACATACAGCAATGTgtacaaagcaaaagaaaagggCACAGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATACTGCAGACGCTGGATCATCCCAATGTCATCAAACTTAAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTTCATGCAGTCAGATCTGACCCGAATTATCTCCCGATCCGGGGAGAAGCTCACCGAACCGCAGaTCAAGTGCTATATGCAGCAGCTGCTTTCTGGGCTCCAGCACTGTTACGAGAGGGGAGTTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGACGAGGGGCGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTAAAGCCGAGAGGCCTCTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTTTAAAAAACTGAACCTAACAACAAGCTACCGGCCTCCGCAACATTACAAACCTAGTTTCCAAGAACACTTCCAGAAGTTTCCTTCCTCTTCCCAGGGTCTCTTGGCTACACTTCTTGATCTCAACCCTGCCCATCGTGGCAGTGCTGCCTCTGCTCTCCAAAGTGACTTCTTCAAATGTAGTCCATTAGCATGTGACCCTTCAGATTTGCCAGTAATGTACAAAGACGAGGATGAACGCTTACAAAATAAGAGAGGCAAAAGGCAAAGGGTTTCTAAAAGAGGGCAACTATCTCAAATAAGTAGAAGTGATGTTACTCAGTCAGGAAAGAACCAAATTGCTGAACAATCCCATAAAGATCCAGAATCGTCAAAAGAGAAGAATATGGAACAACACAAGCAAGGTCAAGAATCGGGGAATAGTGCTAGCAGCACATCATCCGGCTCAAGACTCTTTATGAACGAAGGGAGCTTGAATGCATTCATGTccccattttctctctctagtgGTAGTGTGAGAAAATCCCCGAAAACAGAGGGCCATCCGAATGCTCTTAAGAACATAAAGAACTATAGTGCTTTCTTACAGGCCTCTATGATAGATATGATTAACCACAATGAAGGCAACGAATTTGCTCAGCTTCGTAGGTCCTTCTCCGCGTTGGATTTTCGACTTGATCCAGAGAAGCTATCAAACCTCTATGGCTTacctaaaaagatttaa 1797 0.4252 MGCVCGKFSPPRKAERPKRQVKRVVSQKGSRTHSSKRVGERESQRQRVSVRVNKDSAAKRDGNAAEGVVGGGEKEKPVAREEKGKVWDDVAKENERKFGEKKMAKYEFVDGWPKWLVDNIPANVLANIVPKSADSYVKLAKIGRGTYSNVYKAKEKGTGKIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRSGEKLTEPQIKCYMQQLLSGLQHCYERGVMHRDIKASNLLIDRRGALKIADFGLATSIKAERPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPSEDYFKKLNLTTSYRPPQHYKPSFQEHFQKFPSSSQGLLATLLDLNPAHRGSAASALQSDFFKCSPLACDPSDLPVMYKDEDERLQNKRGKRQRVSKRGQLSQISRSDVTQSGKNQIAEQSHKDPESSKEKNMEQHKQGQESGNSASSTSSGSRLFMNEGSLNAFMSPFSLSSGSVRKSPKTEGHPNALKNIKNYSAFLQASMIDMINHNEGNEFAQLRRSFSALDFRLDPEKLSNLYGLPKKI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2614 598 SUPERFAMILY Protein kinase-like (PK-like) 129 419 IPR011009 -
Ssu1g2614 598 MobiDBLite consensus disorder prediction 16 30 - -
Ssu1g2614 598 MobiDBLite consensus disorder prediction 1 82 - -
Ssu1g2614 598 PANTHER CELL DIVISION PROTEIN KINASE 78 557 - -
Ssu1g2614 598 MobiDBLite consensus disorder prediction 473 491 - -
Ssu1g2614 598 Pfam Protein kinase domain 136 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2614 598 MobiDBLite consensus disorder prediction 437 508 - -
Ssu1g2614 598 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Ssu1g2614 598 Gene3D Phosphorylase Kinase; domain 1 124 218 - -
Ssu1g2614 598 PANTHER CYCLIN-DEPENDENT KINASE 78 557 - -
Ssu1g2614 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Ssu1g2614 598 SMART serkin_6 136 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2614 598 MobiDBLite consensus disorder prediction 492 508 - -
Ssu1g2614 598 ProSiteProfiles Protein kinase domain profile. 136 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2614 598 MobiDBLite consensus disorder prediction 451 472 - -
Ssu1g2614 598 Gene3D Transferase(Phosphotransferase) domain 1 219 501 - -
Ssu1g2614 598 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2614 Ssu-Chr1 71350114 71355651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2614 131 486 Core Cell Cycle Gene Families AT5G10270 44.271 6.55e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu1g2614 Pkinase 2.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2614 K08819 - gmx:100782603 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2614 1 71350114 71355651 Ssu1g2614 1 71350114 71355651 ECH