Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2609 ATGAACAACCCCGCATTGTCAAGGCTGTTTCCGGGCATGAATAGGGAGAGGGAGATGTCTGCTATGGTCTCAGCTTTGGCCCACGTGGTCTCCGGAGAGGTGCCAACTGGTGATGATGCGGTTCTTCATCAACTCACTGCTATTGGAGGAGCTGATGATGCTGTAATTACACCAACACCCTCTTTGCCGCCTTCATCTAATTATGTTGTTGGCACCTCTTCTGTCAAGAGAAGTAGAGAACATGATACATATACATCCTTCTCACCTGCCGCTTCATCCCCAGTCATGCCAACAGGAAGTACAGAATGTTCAAACAACTGGACAAGCAGCACAAGAACAGAAACAAGGGAAATGGGAAATCCTGTGTACGAATACAGAACAACAGAGAATGTGGTGAGGGATGAGGGAAGGAGAAAATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCTGCGGAGATAAGAGACCCATTCAAAGCGGCGAGGGTGTGGTTAGGGACATTTGACACCGCAGAGGCAGCTGCTAGAGCCTACGATGAAGCTGCCCTTCGTTTCAGAGGCAACAAGGCCAAACTCAACTTTCCCGAGAATGTCACTCTCCGACAACCTCAGTTTAGTATTTCCAATTCTCCCACTTCTCTCGTGTCTATTACAACGTCCACCGACCCAGTTGTTCACACTCGACCTCTTCTCCCTTCTCAGGGTTCCACCAACTTTAACGAGTATTTTCAACTCTTGGGCAATCCCTCCAACCTTTATGATGATCAGATGTTCATGATGTCTACCATGGCTTCTCATCTTCAATCTTCGTCGTCGCCACCGCCTTCGGTGTCTTCTTCTTCTGCGTTTGCTTCCTCTATAACTTCTCCGCAGGCCACTTCGCTTTCTTCTTTGTATTCTAGCCAGTTGCCGCCATGGTCAGCCTCTGGCCATAGCTCTTCTTCCTcgggatga 957 0.489 MNNPALSRLFPGMNREREMSAMVSALAHVVSGEVPTGDDAVLHQLTAIGGADDAVITPTPSLPPSSNYVVGTSSVKRSREHDTYTSFSPAASSPVMPTGSTECSNNWTSSTRTETREMGNPVYEYRTTENVVRDEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFSISNSPTSLVSITTSTDPVVHTRPLLPSQGSTNFNEYFQLLGNPSNLYDDQMFMMSTMASHLQSSSSPPPSVSSSSAFASSITSPQATSLSSLYSSQLPPWSASGHSSSSSG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2609 318 MobiDBLite consensus disorder prediction 84 116 - -
Ssu1g2609 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 14 317 - -
Ssu1g2609 318 PANTHER DNA-BINDING DOMAIN 14 317 IPR044808 GO:0003700|GO:0009873
Ssu1g2609 318 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Ssu1g2609 318 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Ssu1g2609 318 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
Ssu1g2609 318 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Ssu1g2609 318 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Ssu1g2609 318 MobiDBLite consensus disorder prediction 83 116 - -
Ssu1g2609 318 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Ssu1g2609 318 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Ssu1g2609 318 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2609 Ssu-Chr1 71247875 71249163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2609 133 201 AP2-EREBP Transcription Factor Family AT5G61890 79.167 2.55e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g2609 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2609 - - gmx:100796247 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2609 1 71247875 71249163 Ssu1g2609 1 71247875 71249163 ECH