Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2608 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAGGAGGACAGAGACTCCAGCAGGAAGAAGAAGGATAGCGGCGAAAGGAGCTACAGGAAGCGCGAGGAGATCGACGACGGCGCCGAAGAGAGGAAGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCCAAGAAGGATAAGGATCGCGAAGACCGCGACAAGGAGCGCCACAGGAGTAGCAGAGACAGAGACAGAGACAGAGACGGTGAGAGAGGTAGCAGAGACAGGGAGAAGGAGAGGGACAAAGAGAGGGATCGGAGAGACAGGGACAAAGAGAGGGAGAAGAGGGAGAAGGAGAGGGacagggagagagagagagacagagaaaaaagggagagagagcgggaggagagagagaggtcTCGGAGGAGCATGAGTCGTTCTGAgcgagatagagagagagaacgaGATTTCGACATGAGAGATAGCAGGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCTTCGGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGgtatattgaattttatgatGCAATGTCAGTGCCAATGGCAATTGCTCTATCTGGCCAACTTCTTCTAGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAATCTTGTCCAATCTAATGCTACTAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTTCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAATCAAGATACAACTGCAAAATCTGCAGactttgatgatgatgaaggtGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGTGAATGGGTCAGCTCCAGCCCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAATACCAGCACCAGCTGTCCCAACACAAATTTTGCCTACCCCAGTGACTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTTGAAGAAGAGTGCTCCAAATATGGACGGGTGAAGCATATCTATGTCGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACGAGGTGGTTTGCAGGAAGAATGATTTCTGCTGTCTTCATGCAACCTCAGATATATGAAGCCAAGTTTAAAGGGGACGCTTGA 1638 0.4451 MDFDEYDYLEKTVEEQEDRDSSRKKKDSGERSYRKREEIDDGAEERKSKRSRGDDENGSKKDKDREDRDKERHRSSRDRDRDRDGERGSRDREKERDKERDRRDRDKEREKREKERDRERERDREKREREREERERSRRSMSRSERDRERERDFDMRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIVNGSAPAQQAIMPIGNPGIIPAPAVPTQILPTPVTEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAVFMQPQIYEAKFKGDA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2608 545 SUPERFAMILY RNA-binding domain, RBD 281 359 IPR035979 GO:0003676
Ssu1g2608 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 527 IPR000504 GO:0003723
Ssu1g2608 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 354 IPR000504 GO:0003723
Ssu1g2608 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 249 IPR000504 GO:0003723
Ssu1g2608 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Ssu1g2608 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 456 534 IPR000504 GO:0003723
Ssu1g2608 545 Gene3D - 447 544 IPR012677 -
Ssu1g2608 545 MobiDBLite consensus disorder prediction 1 180 - -
Ssu1g2608 545 CDD RRM1_RBM39_like 181 253 - -
Ssu1g2608 545 SMART rrm2_1 457 530 IPR003954 GO:0003676
Ssu1g2608 545 MobiDBLite consensus disorder prediction 12 179 - -
Ssu1g2608 545 CDD RRM3_RBM39_like 450 532 - -
Ssu1g2608 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Ssu1g2608 545 Coils Coil 98 147 - -
Ssu1g2608 545 SUPERFAMILY RNA-binding domain, RBD 448 533 IPR035979 GO:0003676
Ssu1g2608 545 Gene3D - 108 268 IPR012677 -
Ssu1g2608 545 SUPERFAMILY RNA-binding domain, RBD 173 261 IPR035979 GO:0003676
Ssu1g2608 545 CDD RRM2_RBM23_RBM39 284 356 - -
Ssu1g2608 545 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 375 469 IPR029123 -
Ssu1g2608 545 Gene3D - 278 374 IPR012677 -
Ssu1g2608 545 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 544 - -
Ssu1g2608 545 SMART rrm1_1 283 356 IPR000504 GO:0003723
Ssu1g2608 545 SMART rrm1_1 181 253 IPR000504 GO:0003723
Ssu1g2608 545 SMART rrm1_1 452 530 IPR000504 GO:0003723
Ssu1g2608 545 TIGRFAM SF-CC1: splicing factor, CC1-like family 65 541 IPR006509 GO:0003723|GO:0005634|GO:0006397
Ssu1g2608 545 PANTHER CC1-LIKE SPLICING FACTOR 1 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2608 Ssu-Chr1 71164160 71171351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2608 254 355 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 5.51e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2608 K13091 - gmx:100802446 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2608 1 71164160 71171351 Ssu1g2608 1 71164160 71171351 ECH