Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2603 ATGGATTTGGACGATTTCCGATCCGTATTGGATACCGCGGGCGTCGACGTGTGGATGTTCATCGACGCTGCAATCGCCGTCGCATCCTTGGACTCCGCCGGCGAGTTGAAGCGCCGCCGCGACGGGATCGTGGAGCGCCTCTACGCGGCCACGGCAGCGCCTCCGAGGTGCCGGAATTGCGACGACGGCCACCGCCTCAACGGCCACCAAGTCAAGAAACAGAACAGCCCTAGCCCCAGCCCCGAGCGGCAACCACACCAAGGCCGCGGCGGCGGCGCCGCTTCCCCGGCGACGCCGCAGTCTGTCGAAAACGACGACGACGGCGGCGGCGAGGAGTTAGATCCTTACGGCGGCTTGTTCGACGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAGGACCCTGACCAGTCTGAAGATTCCTTGGTCGAGTTGTTGCAAAGCCTGGCGGACATGGATATTACATTCCAAGCGTTGAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTGCGGAAGCATCCTTCAAACGACGTTCGCCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACAGTCTGATGGCTGATGGAGACTCGCCAGTGCAGAAAACCACCCAAAATGGCCATCATCAGCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCAGGCTCTGACCGTAACAACTCAGAAGCGGAACACAAACCCAAAGTAATACCCCGCAGTGAACCTCGCCCAAAAACCACGCCATCACCGTCAGTTTCCACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAATTTTGACGCGGAGAGGCTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTAGTTCTCAGGGAAGGCACTGGTGA 1059 0.5552 MDLDDFRSVLDTAGVDVWMFIDAAIAVASLDSAGELKRRRDGIVERLYAATAAPPRCRNCDDGHRLNGHQVKKQNSPSPSPERQPHQGRGGGAASPATPQSVENDDDGGGEELDPYGGLFDDEQKKILEIKEQLEDPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNSLMADGDSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKTTPSPSVSTPASATQNRQRESNFDAERLASARRRLQENYKEAENAKRQRTIQVMDIHELPKSKPKNAFFGKNKGGGSSQGRHW 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2603 352 MobiDBLite consensus disorder prediction 306 352 - -
Ssu1g2603 352 MobiDBLite consensus disorder prediction 274 288 - -
Ssu1g2603 352 MobiDBLite consensus disorder prediction 54 118 - -
Ssu1g2603 352 Coils Coil 294 321 - -
Ssu1g2603 352 MobiDBLite consensus disorder prediction 250 264 - -
Ssu1g2603 352 CDD TFIIS_I 124 197 - -
Ssu1g2603 352 SMART TFS2_5 127 198 IPR003617 GO:0005634
Ssu1g2603 352 MobiDBLite consensus disorder prediction 203 249 - -
Ssu1g2603 352 ProSiteProfiles TFIIS N-terminal domain profile. 122 199 IPR017923 -
Ssu1g2603 352 MobiDBLite consensus disorder prediction 203 293 - -
Ssu1g2603 352 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 208 IPR035441 -
Ssu1g2603 352 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 352 IPR044790 -
Ssu1g2603 352 Pfam TFIIS helical bundle-like domain 147 196 IPR017923 -
Ssu1g2603 352 MobiDBLite consensus disorder prediction 306 333 - -
Ssu1g2603 352 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 352 - -
Ssu1g2603 352 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 209 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2603 Ssu-Chr1 71042976 71044840 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu1g2603 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2603 - - gmx:100790582 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2823 5 74317809 74319271 Ssu1g2603 1 71042976 71044840 PCT