Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2602 ATGAGGCCCCTTCTTCGAAAGAACCACTTGTTGGCGCTTCGCGTTGGGCTTCGGGCGCGTGAGTCGTCATCATCTTGTTGTGGTCATCACCGGCAGGGTCCGGGGGAGGAGTCCCGAAACGTGAAGGTTTCGGTGTGGTGGGATTTCGAGAACTGCAACGTGCCCGCGGGGACTGAAGCTTTGGATGTGGCCCCCGCAATCACGAGGGCTCTGAGAGCCAACGGGATTAAGGGCCCTCTTCGTATCAGCGCTTTCGGTGATGTTCTGCTGTTCTCCAAAGCCACCCAGCAAGCACTTGCTCACACCGGCATTCATTTCACCCACATTCCcgGAAAGAACAGTGCCGATAGATTTCTTCTTGTTGATCTTATGGATTGGGTTTCTCGAAATCCTCCACCTGCACATCTCTTTTTGATATCTGGTGATGGAGACTTTGCTGGAATATTACACCGGTTAAGAatgaataattacaatatattgcTTGCTAGCCCACGGCAAGCTCCTGATGTTCTCTGCAGTGCAGCAACTATAATATGGCAATGGTCTTCATTAGTAAAGGGGGAATATCTTTCTGGAAAACATTTTAACCATCCTCCTGATGGTTTACTTGGTTCTTGGTATGGAAATTACGAGGTGACTCTTCAAAAACCGTTCTCAGCTGTTGAACAGTCTACATCTTCACAGAAAGTGGATATATATGAACCTGCCTTAGATTTACATACTGTTCCAAAAGCAGTTGTAAGACAGATTTGGCGTATATTGAGATCACATCCAAAAGGAATCTCAATTGGAGATCTTCGTTTAGAGTTGATGAAACATAATGTGCCTTTCGTTAAAAACTTTTATGGATATAAAACATTTGCTCGCTTTCTATCATCAACCCCATATGTAGAGCTCAAGCCTTTAGGTGATGGTAATTTTCATGTATATCTGGTCCCCTCAGAACCTCCTAAACCTTTTGAGGGCAATGCTGTAGAATCAGTAACATCTGCTATTAAGATTGATGAGAGGGGATCTGCAGCAACTCCAAAGCTAAATGATGAGGATAAAAATAAGGCTAGAGAAGCAAATGAGACACCCTTAACTGCCTCATTTCATAAAAGGAGTATGAATGATGATTCAAAATCATTCCAACCAGTCACTTCACTAGTCAAACCCATGGGAGAATATGTGGATGCTAAATCATCACTTTCATTGGTTGAAAGACGTGTGCCTCAGGCCTCAAATGAGTTGCAGAAATCTTCTTTGTGTAATGGGGAGGTTGTAGATATGACTATTGCACAACTGTCAAAGATTCAACCACAACTCAAGGACAACCAAGTTTCCAAAACTAAGCCAGATTCCTTAAAAATGAGTTCTAAAAACTCATCTGATGATGACATCATTGGGTCTGAGGATGCAAGTCATAAAATTCAGGAAAAATATATGACTTCAAGGAATCACTCTGCTGGCAATGATCAGATAGCAGTGGAAGACATTGGCAGTGCAAAATCTGGTGATTCAATTGCTCATCAGAACAACTTGGTTAGTCATTTTGAGGATTCTAACTCATCTGAACTAGACCAGACAGTCCAGACTGTTAATGATTTTGAAGAACCCAAGTTATCAGAACTGAACCAGAATGTTATTTGTTCTGGAAAGCCTGAGTCATTTTCTAGTGGTTCATTTTGGAATGACATGGAATCTTTTATTTTCACGCTCAAAGGATCATTTATTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACATAAGGATGGACCCCTGGTTCTTAGATCTCTCACTGAAAAAGATATCCTTCAATTGGTGGAATTGTTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCCCTCTCAAACATTTCCTTTTAGGCTAACTCAACCAATTCAGAAGAACTCATTGATGGGCCAATCTTGTGGTGCAAATGGCTTGAGATCTCTCTTTCTGAGCAGAGCATCACAGTCCAAGTTGCAAAAATCATCTGAACATGATGTGGAGAAACACAATCAGAGTATTCCCCACACTAGAGTTTCTGCAACTGCCACTGAGACGAAATATACAGAGAGGTCTAGAAATGATATATTAGAAGATTGTCAGAAACTTGTGAGTGAGATATTGAGGGAACACCCAGAGGGATATAGTATCAGTTCTTTCCCAAGACTGTTTGTTGATAGGTGTGGCTATCATCTTGATTTACAGAAGCTTGGTTACCATAAGTTGGGATCCTTACTACAGATAATGCCTGGTCTTAAAGTAGAATctacttatatttttccttctgTTCCTGCTGTTAGTGCTTCTGTAGGGGAAACTTTTAATCTCAAAACTCAAGTAACCAATGCTTGTAATGCTCATGTAGTCTTGAACTCAGATAGTGAATTATCTGATTCAGCCCCCCAAGATGATAACATGGATTCTCCATGGGAGGAATTAGGTCATGTTTCTGTCAACAATTCCAATCAGAGTAATCTGGAGTCAAAATGA 2493 0.4075 MRPLLRKNHLLALRVGLRARESSSSCCGHHRQGPGEESRNVKVSVWWDFENCNVPAGTEALDVAPAITRALRANGIKGPLRISAFGDVLLFSKATQQALAHTGIHFTHIPGKNSADRFLLVDLMDWVSRNPPPAHLFLISGDGDFAGILHRLRMNNYNILLASPRQAPDVLCSAATIIWQWSSLVKGEYLSGKHFNHPPDGLLGSWYGNYEVTLQKPFSAVEQSTSSQKVDIYEPALDLHTVPKAVVRQIWRILRSHPKGISIGDLRLELMKHNVPFVKNFYGYKTFARFLSSTPYVELKPLGDGNFHVYLVPSEPPKPFEGNAVESVTSAIKIDERGSAATPKLNDEDKNKAREANETPLTASFHKRSMNDDSKSFQPVTSLVKPMGEYVDAKSSLSLVERRVPQASNELQKSSLCNGEVVDMTIAQLSKIQPQLKDNQVSKTKPDSLKMSSKNSSDDDIIGSEDASHKIQEKYMTSRNHSAGNDQIAVEDIGSAKSGDSIAHQNNLVSHFEDSNSSELDQTVQTVNDFEEPKLSELNQNVICSGKPESFSSGSFWNDMESFIFTLKGSFIVSQSKNREDMAHKLHKDGPLVLRSLTEKDILQLVELLISEKKWLEESPSQTFPFRLTQPIQKNSLMGQSCGANGLRSLFLSRASQSKLQKSSEHDVEKHNQSIPHTRVSATATETKYTERSRNDILEDCQKLVSEILREHPEGYSISSFPRLFVDRCGYHLDLQKLGYHKLGSLLQIMPGLKVESTYIFPSVPAVSASVGETFNLKTQVTNACNAHVVLNSDSELSDSAPQDDNMDSPWEELGHVSVNNSNQSNLESK 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2602 830 PANTHER LIMKAIN B LKAP 20 825 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu1g2602 830 Gene3D - 692 759 IPR041966 -
Ssu1g2602 830 Gene3D - 36 182 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 796 830 - -
Ssu1g2602 830 Pfam OST-HTH Associated domain 578 626 IPR025677 -
Ssu1g2602 830 Pfam NYN domain 42 175 IPR021139 GO:0004540
Ssu1g2602 830 Gene3D - 241 316 IPR041966 -
Ssu1g2602 830 ProSiteProfiles OST-type HTH domain profile. 697 771 IPR025605 -
Ssu1g2602 830 PANTHER EMB|CAB71880.1 20 825 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 435 458 - -
Ssu1g2602 830 ProSiteProfiles OST-type HTH domain profile. 242 313 IPR025605 -
Ssu1g2602 830 CDD PIN_limkain_b1_N_like 42 164 - -
Ssu1g2602 830 Pfam OST-HTH/LOTUS domain 698 756 IPR025605 -
Ssu1g2602 830 Pfam OST-HTH/LOTUS domain 244 308 IPR025605 -
Ssu1g2602 830 CDD LOTUS 243 311 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 815 830 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 435 463 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 340 356 - -
Ssu1g2602 830 MobiDBLite consensus disorder prediction 336 362 - -
Ssu1g2602 830 CDD LOTUS 698 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2602 Ssu-Chr1 71030270 71035263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2602 41 187 C2H2 Transcription Factor Family AT5G61190 46.980 5.17e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2602 - - ccaj:109796744 1135.17