Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2601 ATGAGGTCCCTTTTCCGAAGCCGCCTCTCGCATTTGTCACCGTCCCCAGCTCGCACACTTCTGGTTCGGCTTCAAGCGTGCGAGCTGTCATCTTCCCCTCACCGCTCGCGAGACGTGAGGGTTTCCGTGTGGTGGGATTTGAAGAACTGCAACGTGCCAGCTGGCGTGGACCCTTCGAAGGTTGCCCCCGCAATCACGCAGGCCGTGAGGGCCAATGGGATTAAAGGTCCGCTTCATATCACCGCTTTCGGCGACGTTCAGCTGCTCTCCAAGTCCAACCAGGAGGCGCTTGCTTCCACCGGCGTTCAATTCATCCACCTTCCTATCgGTGGAAAAAATAGTGTCAACATTCTTGTTGATATCATGTTTTGGGTATTCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCTGGTGATAGAGATTTTGCTTGCATATTACACCGGTTAAGAATGAATAATTACAATATCTTGCTTGCCAGCCCAGAGAAGGCTTCTGATGTTCTCTTCAGTGCAGCAACTATAATGTGGCAATGGTCTTCATTGCTTAAGGGAGAAAATCTTATTGGAAAACATTTCAACCATCCTCCTGATGGTCCATTTGGTTCTTGGTATGGAAACTCTAAGGTGCCACTTGAAAACCCATTCCCAGCTGCTGAGCAATCTAAATCTTTACAAAATGTGGAGATCTATGAACCTTCCTTAGACTTAAAAATAGGTGCAGTACCAAAGTCCATTGTACGGCAGGTTAAGCATATATTGAGTTCACATCCAAAAGGGATGTCCATTACAGATGTTCGTGCGGAGTTGACAAAATGTGAAGTGCATTTGGATAAAAGTTTATATGGATTTAGAAGCTTTTCACGCTTTCTATTATCAATCCCACACGTACAGCTCCAGCCATTAGGGAATGGTAATTTTGGTGTATGTTTGGTCCCCTCAAAACCCCCTAAACCTTTTGACGGCGGTGTTGTCCTGTCAACGTCATCTGCTGTTAAGAATGAGGAGAGGGGACATGCAGATGAGACTCCCTCAATTGCCACATTCCATGCAAGGAGTATGAATGATGATTCAAAATCATTCCAACCAGTCCCTCCCCAAGGCAAAACCATTGGGGAATATGTGGATGGTAAATCATCATTTCGTTCATTGGTTGAAAGACATGAATTTCAGCCCCAGAATCAGTTGCAGAAATCTTTTCTGGTTAGCGAGAAGGTTGTGGATGTGGCTAATGCACAAGTACCTGAGATTCAACAGCCAtccaaagacaaaaaatattccGAAACTAAGACAAGTTCCTTAAAAACTAGATCTAAAAAGTCATCTGACAATGACAATGTTAAGTCTGAGGATGCAAGTCATAAAATTGTAGGTAAACATACCACTTCAGGGAATCACTGTACTGGAAATGATCACACAACAATGGAAAACAATGGTGCTGCAAATTGTGAATTGGGAAATTTTAAAGCAAAGAACAAATATGAGAGTCCAACTAGAAAAGAGGCTGATGAAGTTTGTTGCAGTTCAACAGTTGATGACTCTCTGGTTGACAAAAGACTCAGTGGAATTGCTGAAACTTATAACAAAAGGCCAACATTCTTTAGCTGGATTAGAAGTTGGTGGCCATTTTGGAAAAGCAATGCAAAGTCTGATGATTCAGCTGCTCATCAGAACAAGGTGGTTAGTAACTTGGAGGATTCCAAGTTATTGGAACTGGACCAGACTGTTAGTCATTTTGAAGAACCCAAGTTATCAGAACTGGACCAGAATGTTATTCGTTCTGGGAAGCCTGAGTTGTTTTCTAGTGGTTCCTTTTGGAGTGACTTGGAATCTTTTATTTCCAAGCCCAAAGGATCACTTCTTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCacataaattacaaaatgatgGACCCCTGGTTCTTAGATCTCTCACTCAAAAAGATATCGTTCAATTGGTGGAATTGTTAATAGCAGAGAAAAAGTGGTTGGTGGAGATCCCCTCCCAAACATTTCCTTTTATGCTAATTCAACCAGTTCAGAAGAACTCATTGATGGGCCAATCCCATGGTCCAAATGGCATGAGATCTGTCTTTCTGAGCAGAGCATCACAGTCCAAGTTGCAAAAATCATTTGAACATGATGTGGAGAAACACAATCAGAGTATTCCACATACTAGAGTTTCCGCTACTGCCACTGAAATGAAATATACTGAGAGGTCTAGAAATGATATATTAGAAGACTTGCAGAAACTTGTGAATGAGATATTGTGGGACCACCCGGAGGGATATAATATCAGTTCTTTCCGAAGACTATTTGTTGATAGGTATGGTTATCATCTTGATATACAGAAGCTTGGTCATCAAAAGTTGGCATCCTTACTACAGATAATGCCTGGAGTAAAATTAGAGTCCACTTATATTTTTCCATCTGTTTCTGCTGTTAGTGCTTCTGATGGGGAAACTTCTATCCTCAAAACTCAAATAACCAGTGCTAGTCATGCAGTCTTGAACTCAGATAGTGAAATATCTGATTCGGCGCCAAAAGATAACAACATGGAATCTCCATGGGAGGAATTAGGTCCTGTTTCTGTCAAGAATTCCAACCAGAGTGATCTGGCATCAAAATTAAGTCAGGAAGTGGAGATATATGAACCTTCCTTAGATTTAAAGTTAGGTACAGTTCCAAAATCAGTTATAAGACAGATTAGGCAAATATTGAGATCACATCCAAAAGGAATCTCAATTACAGATCTTCGTGCAGAGTTGACAAAATGTAATGTGTGTTTGGATAAAAGCTTTTATGGATATAACACATTTTCTCACTTTCTGTCATCAATTCCACATGTAAAACTGCAGCCTTTAGGTGATGGTAAATTTTGTGTAAGTTTGGTCACCTCAGAATCTCCCGAAACTTTTGAGAGCAATGCTGTACATTCAATAACATCTGCTGTTAAGATTGATGAGAGCAATGCAAAGTCTGATGATCTGGCTGCTCATCAGAACAAGGTAGTTAGTCACTTGGAGGATTCTAAGTTATCTGAACTGGACCAGACTGTTAGTCATTTTGAAGAACCCAAGTTATCAGAATTGGACCAGAATGTTATTTGTTCTGGAAAGCCTGAGGTGTTTTCTTGTGGTTCCTTTTGGAATGACATggaatcttttattttcatgcCCAAAGGATCACTCCTTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACAAAAGGACGGACCCCCGGTTCTTAGATCTGTCACTGAAAAAGATATCCTTCAATTGGTGGACTTGTTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCTCTCCCAAACATTTCCTTTTAGGCTAAGTCAACCAGTTCAGAAGAACTCATTGATGGGCCAATCTCATGGTGCGAATGGCTTGAGCTCTCTTTTTCTGAGCAGAGCATCACTGACCAACTTgcaaaaaccatttgaacatgaTGTGGAGAAACACAATCAGAGTATTCCTCATACTAGAGTTTCTGCAACTGCCATCGAGACAAAACATACCGAGAGATCTAGAAATGATATATTAGAAGATTGTCAGAAACTTGTAAGTGAGATATTGAGGGAGCACCCAGAGGGATATAGTATCAGTTCTTTTCCAAGTCTTTTTGTTGATAGGTATGACTATCATCTTGATTTACAGAAGCTTGGTTACCAAAAGTTGGCAACCTTAATACAGATAATGCCGGAAGTTAAAGTAGAGTCGacttatatttttccttctgTTCCTGCTGTTAGTGCTTCTGATGGGGAAACTTTCAATCTCAAAACCCAAGTAACCAATGCTAGTCATGCTCATGCAGTCTCGAACTCAGATAGTGAATTATCTGATTCAGCCTCCGAAGATGATAACATGGAATCTCCATGGGGTGAATTAGTTCATGATTATGAACCCATAGTCTCAGATTATGATTCTTCTGAATCTGAAGGAGATTGCTCTTATTTAACTCGATCTGAAAAGCAAGGAAACCCAAGATGGAATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTTGTTGCACAGCAGCAAGGAAAGAGAGAATAGTGCCAAGAAGTCAGACAATGTTGGCCGCTTGGGTAATACTTTGGCTGACATTTTAAATTCATCCCCCGAGTCTACCCGGGGTACCCTTTCCAAAATTCCTGTAGGGAATTACAGCCAAAGCTCTCAAAAGAACTATTCGTTTGTTGCTGACCCAGGACTCTTACCTGACAAAGACAGGCTGGTTGATGGGATATTAAATGGCCTCAAGAAAGCAGATGagtcaaaaatgaaaaactga 4332 0.4026 MRSLFRSRLSHLSPSPARTLLVRLQACELSSSPHRSRDVRVSVWWDLKNCNVPAGVDPSKVAPAITQAVRANGIKGPLHITAFGDVQLLSKSNQEALASTGVQFIHLPIGGKNSVNILVDIMFWVFQNPPPAHLFLISGDRDFACILHRLRMNNYNILLASPEKASDVLFSAATIMWQWSSLLKGENLIGKHFNHPPDGPFGSWYGNSKVPLENPFPAAEQSKSLQNVEIYEPSLDLKIGAVPKSIVRQVKHILSSHPKGMSITDVRAELTKCEVHLDKSLYGFRSFSRFLLSIPHVQLQPLGNGNFGVCLVPSKPPKPFDGGVVLSTSSAVKNEERGHADETPSIATFHARSMNDDSKSFQPVPPQGKTIGEYVDGKSSFRSLVERHEFQPQNQLQKSFLVSEKVVDVANAQVPEIQQPSKDKKYSETKTSSLKTRSKKSSDNDNVKSEDASHKIVGKHTTSGNHCTGNDHTTMENNGAANCELGNFKAKNKYESPTRKEADEVCCSSTVDDSLVDKRLSGIAETYNKRPTFFSWIRSWWPFWKSNAKSDDSAAHQNKVVSNLEDSKLLELDQTVSHFEEPKLSELDQNVIRSGKPELFSSGSFWSDLESFISKPKGSLLVSQSKNREDMAHKLQNDGPLVLRSLTQKDIVQLVELLIAEKKWLVEIPSQTFPFMLIQPVQKNSLMGQSHGPNGMRSVFLSRASQSKLQKSFEHDVEKHNQSIPHTRVSATATEMKYTERSRNDILEDLQKLVNEILWDHPEGYNISSFRRLFVDRYGYHLDIQKLGHQKLASLLQIMPGVKLESTYIFPSVSAVSASDGETSILKTQITSASHAVLNSDSEISDSAPKDNNMESPWEELGPVSVKNSNQSDLASKLSQEVEIYEPSLDLKLGTVPKSVIRQIRQILRSHPKGISITDLRAELTKCNVCLDKSFYGYNTFSHFLSSIPHVKLQPLGDGKFCVSLVTSESPETFESNAVHSITSAVKIDESNAKSDDLAAHQNKVVSHLEDSKLSELDQTVSHFEEPKLSELDQNVICSGKPEVFSCGSFWNDMESFIFMPKGSLLVSQSKNREDMAHKLQKDGPPVLRSVTEKDILQLVDLLISEKKWLEESLSQTFPFRLSQPVQKNSLMGQSHGANGLSSLFLSRASLTNLQKPFEHDVEKHNQSIPHTRVSATAIETKHTERSRNDILEDCQKLVSEILREHPEGYSISSFPSLFVDRYDYHLDLQKLGYQKLATLIQIMPEVKVESTYIFPSVPAVSASDGETFNLKTQVTNASHAHAVSNSDSELSDSASEDDNMESPWGELVHDYEPIVSDYDSSESEGDCSYLTRSEKQGNPRWNEQDSSFWQALDLLHSSKERENSAKKSDNVGRLGNTLADILNSSPESTRGTLSKIPVGNYSQSSQKNYSFVADPGLLPDKDRLVDGILNGLKKADESKMKN 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 417 472 - -
Ssu1g2601 1443 CDD LOTUS 1192 1249 - -
Ssu1g2601 1443 Pfam OST-HTH Associated domain 1072 1122 IPR025677 -
Ssu1g2601 1443 ProSiteProfiles OST-type HTH domain profile. 896 967 IPR025605 -
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 458 472 - -
Ssu1g2601 1443 CDD LOTUS 897 965 - -
Ssu1g2601 1443 CDD PIN_limkain_b1_N_like 40 162 - -
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 1279 1343 - -
Ssu1g2601 1443 Gene3D - 243 310 IPR041966 -
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 841 866 - -
Ssu1g2601 1443 Gene3D - 1186 1254 IPR041966 -
Ssu1g2601 1443 Gene3D - 741 808 IPR041966 -
Ssu1g2601 1443 Gene3D - 895 972 IPR041966 -
Ssu1g2601 1443 CDD LOTUS 243 297 - -
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 421 457 - -
Ssu1g2601 1443 PANTHER LIMKAIN B LKAP 878 998 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu1g2601 1443 PANTHER LIMKAIN B LKAP 3 872 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu1g2601 1443 ProSiteProfiles OST-type HTH domain profile. 242 313 IPR025605 -
Ssu1g2601 1443 ProSiteProfiles OST-type HTH domain profile. 1191 1265 IPR025605 -
Ssu1g2601 1443 MobiDBLite consensus disorder prediction 1322 1343 - -
Ssu1g2601 1443 CDD LOTUS 747 802 - -
Ssu1g2601 1443 PANTHER EMB|CAB71880.1 878 998 - -
Ssu1g2601 1443 PANTHER EMB|CAB71880.1 983 1380 - -
Ssu1g2601 1443 PANTHER EMB|CAB71880.1 3 872 - -
Ssu1g2601 1443 Pfam NYN domain 40 173 IPR021139 GO:0004540
Ssu1g2601 1443 ProSiteProfiles OST-type HTH domain profile. 746 820 IPR025605 -
Ssu1g2601 1443 Pfam OST-HTH/LOTUS domain 1192 1251 IPR025605 -
Ssu1g2601 1443 Pfam OST-HTH/LOTUS domain 244 306 IPR025605 -
Ssu1g2601 1443 Pfam OST-HTH/LOTUS domain 747 805 IPR025605 -
Ssu1g2601 1443 Pfam OST-HTH/LOTUS domain 898 960 IPR025605 -
Ssu1g2601 1443 PANTHER LIMKAIN B LKAP 983 1380 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2601 Ssu-Chr1 71019623 71025487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2601 39 185 C2H2 Transcription Factor Family AT5G61190 46.309 9.28e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2601 - - gmx:102660946 2046.55