Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2600 ATGAGTGAACGAAAGCCATATTTGGCAATGTTtgtaatacaattaatatattccGGGCTGACCTTGTTGTCCAAGGCCGCGTTTAACGGGGGAATGAATACCTGTGTGTTTATCTTTTATAGACAGCTGACTGGAGCcgttattttggtccctctggCCTTAATACTTGAAAGAAAAAGAGCAGTGCCAGTGCCACTTTCATGTTTGACCTTCTGCAAGATttttgtgttttcattttttggACTCACTCTGAGTCTAAGTATGCAAGCTATTGCCCTTGTTTACACGTCTGCCACGTTGGCCGCTGCAATTATTAATTCCCTCCCCGCAACTACGTTCTTCTTTGCTGTGCTGCTCAGAATGGAGAAGGTAAATATAAGGACAAAATCTGGAATTACAAAGATAGGAAGTGTGTTACTGTGCATGGTTGGTGTAGCGACCCTAGCATTTTACAAGGGACCCCAGTTAAGGACTGCTCATCACATCCTATCCAGATACCACAATCACGACAGTCCACAGCATGAAGATCATTTTTCATCCGGCAAAAGATGGATATTTGGTTCCTTACTCTTGTTCTTAGGCATCACCATATGGAGCTTTTGGCTTATAATTCAGGCACAAATTCTTAAAAGCTATCCTGCAAAACTGATGTTCACGAGCCTTCAGTGCCTATCAAGTTCAATTCAGTCATTTGGTATTGCTATAGCTTTTGAAAGAGATATTCAGCAATGGAAGTTGGGTTGGAACATGAGACTGCTTGCAGTTGTTTACTCTGGGGCACTGGTGACTGGGGTCGGCTACTACTTGCAAGCTTGGGTGATCGAAAAGAGAGGACCAGTTTTTCCCGCAATGTGGAACCCACTGAGTTTTATAATTGCTACAACAGGTTCTATATTGCTCTTGGGCGAGCCCCTAAGTTTAGGGAGCGTTCTGGGTGGGATTCTGCTGGTTTTAAGCCTCTACAGTGTTTTGTGGGCAAAAAGCAAAGAAGGAATGACTCATCAAAATTCTTTACCCGTGCAAGCACAATGTGAAGAGGTGAAAACAGAGGCCAGTGGCAGGGAACCACCGCAACCcctataa 1083 0.4164 MSERKPYLAMFVIQLIYSGLTLLSKAAFNGGMNTCVFIFYRQLTGAVILVPLALILERKRAVPVPLSCLTFCKIFVFSFFGLTLSLSMQAIALVYTSATLAAAIINSLPATTFFFAVLLRMEKVNIRTKSGITKIGSVLLCMVGVATLAFYKGPQLRTAHHILSRYHNHDSPQHEDHFSSGKRWIFGSLLLFLGITIWSFWLIIQAQILKSYPAKLMFTSLQCLSSSIQSFGIAIAFERDIQQWKLGWNMRLLAVVYSGALVTGVGYYLQAWVIEKRGPVFPAMWNPLSFIIATTGSILLLGEPLSLGSVLGGILLVLSLYSVLWAKSKEGMTHQNSLPVQAQCEEVKTEASGREPPQPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2600 360 PANTHER WAT1-RELATED PROTEIN 5 339 IPR030184 GO:0016021|GO:0022857
Ssu1g2600 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 328 - -
Ssu1g2600 360 Pfam EamA-like transporter family 5 133 IPR000620 GO:0016020|GO:0016021
Ssu1g2600 360 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020|GO:0016021
Ssu1g2600 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 151 - -
Ssu1g2600 360 PANTHER WAT1-RELATED PROTEIN 5 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2600 Ssu-Chr1 71002827 71008415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2600 1 257 Nodulin-like Gene Family AT5G64700 51.527 6.50e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2600 - - vun:114162763 515.768