Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2599 atgaaaggaaacaaTCCCTATTTGGTTGTGATTGTCATACAAGCCATATACGCTGCTATGTTCCTTCTCTCAAAAGCTGCATTCGACCATGGCATGAACAATTTCATCTTCGTCTTCTATAGACAGGCAATAGCGACCCTCTTTTTGACCcctttcactttcttcttcGAATGGAAAACTGCACCTCCTTTGTCCTTTCGGACCTTCTGCAAgattttctccctttctttctGTGGAATTACATTAAGCTTGGACATATATGGTATCGGCCTTATTTACACCTCAGCAACTTTGGCTGCTGCTACCACAAACTGTCTTCCAGTTATCACCTTCTTCTTGGCCCTCCTACTAAGGATTGAGAGTTTGAAAATAAAGACGACCTCTGGGATTGCTAAGATGATAGGCATTGTGGCATGCTTGGCTGGTGCAGCAACCCTTGCCTTTTATAAAGGTCCTCCCTTGAAACTTTTAAGCCATTATCACCTTTTGGATTACCATAAAAGCCTACAACATCAAGGTCCTCCATCCGGTGCATGGATAAAGGGTTGCTTCATCATGCTCCTCTCCAACATGTGTTTCGGGCTATGGCTTGTACTTCAgGCTTTTGTTATAAAAGGCTACCCTTCAAAGCTGCTCTTCACAACTCTTCAGTGTTTCTTAAGCTCAATTCAGTCTTTTGTCATTGCCTTGGCCGTAGAAAGGGACATTGAGCAATGGAAGTTGGGTTGGAATGTCAGGCTCCTCGCCGTAATATACTGTGGAATTATGGTCACCGGTGTCACATATTACTTACAAACATGGGTTATAGAGAAGAAAGGACCTGTGTTTCTAGCCATGTCAACTCCACTGGCTCTTATTATTACAATCTTTGCCTCTGCAACTGTCTTGGGCGAGATAATAAGTTTGGGAAGCCTTTTAGGAGGGTTCGTATTGGTTCTGGGACTATACAGCGTACTGTGGGGAAAGAGCAGGGAGCAAATACCAAAAGCCACGCTTGACATGGAGCAGCAGGCATCGGGTATATTGGAATGA 1032 0.4196 MKGNNPYLVVIVIQAIYAAMFLLSKAAFDHGMNNFIFVFYRQAIATLFLTPFTFFFEWKTAPPLSFRTFCKIFSLSFCGITLSLDIYGIGLIYTSATLAAATTNCLPVITFFLALLLRIESLKIKTTSGIAKMIGIVACLAGAATLAFYKGPPLKLLSHYHLLDYHKSLQHQGPPSGAWIKGCFIMLLSNMCFGLWLVLQAFVIKGYPSKLLFTTLQCFLSSIQSFVIALAVERDIEQWKLGWNVRLLAVIYCGIMVTGVTYYLQTWVIEKKGPVFLAMSTPLALIITIFASATVLGEIISLGSLLGGFVLVLGLYSVLWGKSREQIPKATLDMEQQASGILE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2599 343 PANTHER WAT1-RELATED PROTEIN 7 326 - -
Ssu1g2599 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 324 - -
Ssu1g2599 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 149 - -
Ssu1g2599 343 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020|GO:0016021
Ssu1g2599 343 Pfam EamA-like transporter family 6 138 IPR000620 GO:0016020|GO:0016021
Ssu1g2599 343 PANTHER WAT1-RELATED PROTEIN 7 326 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2599 Ssu-Chr1 70972917 70976601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2599 1 253 Nodulin-like Gene Family AT5G64700 61.628 1.55e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2599 - - gmx:100804562 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2824 5 74339248 74342228 Ssu1g2599 1 70972917 70976601 PCT