Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2596 ATGCTGGAAATCTCAACTTTACCGGGAACCCCAACAGAGAACCCGGAGGGCGGCGCCGCGGCGATCTCCGATGGGTCGAAGGCGGAGCACGGCGAAGACGGCGACCGGAATTCCACCGCGAACCGATGGCCTCGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCCGACATGGACGTTGCTTTCAGAGACACAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATGATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACGAAGGAAGGGCGTTGCGGCAGACCCAACGGTAGCAAAACTTATCGGTTTTTCGAGCAATTGGAAGCCTTAGAGGGTCACCACTCACTTGCTCCTCCTTTGGCTTCCTCGGAGGAAGTAACTGTTAAATCCGCAACGGCCGCAGGAACAACCCATGTACCGGACAACAATGATGTTATACGAGACGCGGTTCCGTGTTCCGTTAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGTTCGGGGAAGGGGTTTAAGAAGAGGAAGCTGACGCGGTTTTTGGAGGGGCTGATGAGGGAAGTGGTAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCATGGAGGTGTTGGACAAGTGCGAGAGGGACCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCTCGGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGGTCGATCGCTGCGGCTAAAGATGAAGCCGTGCTTGCGTTTCTCAGAAAGTTCGCAGAAGCAGAAGGCGCGGTGCAGTTACTCGAGAAAATTCAGGTTCAAAACGACAAGGACAAGGACAAGAACATGCAAgaaaatgttaatgttaatgGGAACGGTGATAATACAGACAAGCAAGAATGTGGAAATGTTAGTGTTGGGAATTTCGTGCACATGAGTTCTTCGCGGTGGCCTAAGGATGAGGTGGAGGCGTTGATAAGGTTGAGGACGCAGCTTGATGTGCAGTCCCAagggaataataataataataataatgggtcTAAGGGGCCTCTTTGGGAGGAGATATCTTCGGCCATGAAGAGCCTTGGCTACGATCGCAGTGCGAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGGCTCAGGATTCCAAAACGTGTCCTTATTATCACCACCTCGAGGCTTTGTACAGTAAGAGGCCCAAGAAGGTGGATGAGTCGGGTGGGAATTCTGGGAACGAGTTGAAGCCTGAGGAGCTTTTGATGCATATCATGGAGAGTCAAGAAGAGAGACCGCATCAGCAACACAGATAG 1392 0.4993 MLEISTLPGTPTENPEGGAAAISDGSKAEHGEDGDRNSTANRWPREETMALLKIRSDMDVAFRDTNPKAPLWEQVSRKLAELGYDRSAKKCKEKFENIYKYHRRTKEGRCGRPNGSKTYRFFEQLEALEGHHSLAPPLASSEEVTVKSATAAGTTHVPDNNDVIRDAVPCSVSAYVGEHSSSTTSCSGKGFKKRKLTRFLEGLMREVVEKQETLQRKFMEVLDKCERDRMAREEAWKKEELARIKKERELLAQERSIAAAKDEAVLAFLRKFAEAEGAVQLLEKIQVQNDKDKDKNMQENVNVNGNGDNTDKQECGNVSVGNFVHMSSSRWPKDEVEALIRLRTQLDVQSQGNNNNNNNGSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRMKEKNKRKAQDSKTCPYYHHLEALYSKRPKKVDESGGNSGNELKPEELLMHIMESQEERPHQQHR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2596 463 MobiDBLite consensus disorder prediction 445 463 - -
Ssu1g2596 463 SMART sant 327 395 IPR001005 -
Ssu1g2596 463 SMART sant 39 101 IPR001005 -
Ssu1g2596 463 Pfam Myb/SANT-like DNA-binding domain 329 422 IPR044822 -
Ssu1g2596 463 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Ssu1g2596 463 SUPERFAMILY Homeodomain-like 328 416 IPR009057 -
Ssu1g2596 463 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Ssu1g2596 463 Coils Coil 243 263 - -
Ssu1g2596 463 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 461 - -
Ssu1g2596 463 CDD GT1 41 106 - -
Ssu1g2596 463 Gene3D - 331 398 - -
Ssu1g2596 463 Gene3D - 43 104 - -
Ssu1g2596 463 ProSiteProfiles Myb-like domain profile. 329 393 IPR001005 -
Ssu1g2596 463 MobiDBLite consensus disorder prediction 1 45 - -
Ssu1g2596 463 CDD GT1 329 400 - -
Ssu1g2596 463 PANTHER - 1 461 - -
Ssu1g2596 463 MobiDBLite consensus disorder prediction 424 463 - -
Ssu1g2596 463 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2596 Ssu-Chr1 70929865 70931464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2596 35 428 Trihelix Transcription Factor Family AT1G76880 44.714 3.96e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu1g2596 Myb_DNA-bind_4 2.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2596 - - pvu:PHAVU_009G147500g 712.605