Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2593 ATGGCTGCCATGAACTCTAGCGTATTGGCTTGTAGCTATGCCATATCAGGTGCAGCATGTTCCGAGCTCAATGGGAAGCTCACTTCCGTGCCCTCTGTTGCATACAAGTTGCCAATGATCAAAGCTGAGGCCAGAGTTCCCAAAGCCAAAGAATCTCAAGCTAGTGAAGGAAGGAGAAGTGCCCTTGTTTTCCTGGCAGCTACCCTTTTCACCACCGCAGCTGCAGCCTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAAAAGAGCAAGGCTAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGCAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCGTTCCTTAGTGAAGATTTGGAGCTTGAGTGTGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGA 507 0.4655 MAAMNSSVLACSYAISGAACSELNGKLTSVPSVAYKLPMIKAEARVPKAKESQASEGRRSALVFLAATLFTTAAAASNSSANAGIIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSEDLELECEGKDKYKCGSNVFWKW 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2593 168 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 39 168 IPR008796 GO:0009522|GO:0015979
Ssu1g2593 168 Gene3D - 84 168 IPR044907 -
Ssu1g2593 168 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 168 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2593 Ssu-Chr1 70860304 70861036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2593 1 139 Calmodulin-binding Proteins AT5G64040 66.438 7.16e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2593 K02701 - gmx:100499729 270.781