Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2592 ATGTATTCTGCTGCCACTTCCTCTACTTCACCACTCCTCCATGACCTGCTTGAGGACTTCCACTCAAGAAGGTTGTTACTCCTTCACTCCCCACTTAACCAATCAGCCAAGCCCCCAACAAGCAGCCACGATTCATCAGAAACATATCTTGGAGATGGTAACTTCGATGCAAATGTTGTTATGGTACTCTCGGTCCTACTCTGCGCTCTTATATGCTCACTGGGTTTGAACTCCATCATAAGGTGTGCACTAAGGTGTTCCAATTTTGTTGTGAGTGACTCAGTAGCGAGCAATAGGCCTCCAGCAAGAGTGGCCAACACGGGAGTCAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTAAGTTACTCGGCTGAGCTGAACCTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTGTCAGAGTTCACCAGTGGGGACAAGGTGCGCATTTTGCCAAAGTGCAACCATGGGTTCCATGTACGCTGCATTGACAAATGGCTAAGTTCACACTCGTCATGTCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAGAAGATTGTTGGGTGCGGGCAGCAAGCTAGCTCATCCCAACAACAACCTGTGTTGTCGGTGCCAGAAACCATTGTAACCATAGCGCCACTGGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 687 0.4862 MYSAATSSTSPLLHDLLEDFHSRRLLLLHSPLNQSAKPPTSSHDSSETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVASNRPPARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCGQQASSSQQQPVLSVPETIVTIAPLEPEGLVRNYRELS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2592 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 181 IPR013083 -
Ssu1g2592 228 PANTHER RING-H2 FINGER PROTEIN ATL78 4 226 - -
Ssu1g2592 228 SMART ring_2 135 176 IPR001841 -
Ssu1g2592 228 Pfam Ring finger domain 134 177 IPR001841 -
Ssu1g2592 228 CDD RING-H2_PA-TM-RING 134 177 - -
Ssu1g2592 228 PANTHER RING-H2 FINGER PROTEIN ATL78 4 226 IPR044602 GO:0016567|GO:0016740
Ssu1g2592 228 SUPERFAMILY RING/U-box 113 182 - -
Ssu1g2592 228 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2592 Ssu-Chr1 70847609 70848295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2592 32 181 C3H Transcription Factor Family AT3G10910 47.436 2.70e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2592 K19040 - gmx:100787934 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2592 1 70847609 70848295 Ssu1g2592 1 70847609 70848295 ECH
Ssu2g2144 2 77351152 77351835 Ssu1g2592 1 70847609 70848295 ECH
Ssu5g2835 5 74435972 74436646 Ssu1g2592 1 70847609 70848295 PCT