Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2587 ATGAGTGTCTTGCAAGTTTTAGCTGTTtttagtgagagagagagagaggtgttTGTGTTGGAACTTGGAAGACGAGGTGGGGGCATGCGATTCATTGACACAACTCCACCCGAAACCACACGACGCTCGATCAATCTCCCTCtctccccttttttttctttgcctttGGTACAGATGAGTTTGGTGGAAACAGAATGCTCAGAGGAGGGTGCAGGCCCTCTAGAGCCTCCTGATCCCAATGTTATTGAAATTGATCCTACTAATCGCTACATTAGGTATAAAGACGTTATCGGCCAAGGAGCTTTCAAGACTGTTTACAAGGCATTTGATGAAATCAATGGACTTGAAGTTGCATGGAGCCAAGTTCAGATTGATGAGGTATTACAGTCACCAGGTGGCCTAGAGAGGCTGTACTCAGAAGTGCATCTTCTAAAGTCACTGAAGTACGATAACATAGTAAAGTTCTACAATTCCTGGATTGATGACAAGCATAGGACTCTTAACTTGATTACTGAGTTGTTCACCTCGGGGAGCCTCAGACAGTATAGTAAGAAACACAAGAAGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGGCAGATTTTAATGGGTTTAAACTATCTCCACAGTCACAATCCACCGATTATACATAGGGACCTGAAGtgtgataatatatttattaatggtcACCGAGGAGAAGTTAAAATTGGAGATCTAGGGTTGGCGACTCTGTTGAAGCAGACTAATGCAAAGAGTGTAATTGGTATGTTCTTTTGTTTTGCTGCATTTTTTTCATCCTTTGTATTGCTAAAACATGACCAGGAATCCTAG 831 0.3911 MSVLQVLAVFSEREREVFVLELGRRGGGMRFIDTTPPETTRRSINLPLSPFFSLPLVQMSLVETECSEEGAGPLEPPDPNVIEIDPTNRYIRYKDVIGQGAFKTVYKAFDEINGLEVAWSQVQIDEVLQSPGGLERLYSEVHLLKSLKYDNIVKFYNSWIDDKHRTLNLITELFTSGSLRQYSKKHKKVDMKAVKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHRGEVKIGDLGLATLLKQTNAKSVIGMFFCFAAFFSSFVLLKHDQES 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2587 276 SUPERFAMILY Protein kinase-like (PK-like) 86 255 IPR011009 -
Ssu1g2587 276 ProSiteProfiles Protein kinase domain profile. 91 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2587 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Ssu1g2587 276 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Ssu1g2587 276 Gene3D Transferase(Phosphotransferase) domain 1 174 263 - -
Ssu1g2587 276 Pfam Protein kinase domain 94 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2587 276 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 62 255 - -
Ssu1g2587 276 SMART serkin_6 91 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2587 276 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 62 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2587 Ssu-Chr1 70803041 70804575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2587 65 258 MAP Kinase Kinase Kinase AT3G18750 74.227 7.23e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu1g2587 Pkinase 5.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2587 K08867 - gmx:121175054 367.851