LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2584	ATGGTGAGAGTCAGAGACGATCTATGCATAACTGTTCCCAGCTTCTTCAAATGCCCCATCTCTCTCGATGTAATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCAGCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGGCGGCAACAACACCTGCCCCGCAACCATGCAGGTCCTCCAAACCAAAGACTTCATTCCCAACCGCACTCTACATAGCCTCATCCAGATCTGGTCCGATTCGGTCCGCCACCAAACCGCTTCCGAACCAGTCCCGTCCCCGGACCAAGCCCTCCGAGCCATCGCCGACTTGCAAACCGACTCCCTCCGGTTCGGCTCGCTCGCCAAACTGCTCCACTTCGCCAAAGACTCTCACCAAAACAAACTCTTCCTCGCGAAAGCGGAAGGCTTCGTGAACAAACTCGTTCGTTTCCTCGGCAATGTCGACGCCGGAGAAACCGCGAGGAGTATTGAATTTCTCGAACAAGTCGTCATCGTGTTAGGTTTAATTCTGGAGAACGTCGAAGATCGCGAGGGACTGAAAAACTCTATGTTGAAAGAAAAGCAACAAAGCTTGGATTCTCTGCTTCTCGTTCTGCGACGAGGAAGCTCCGATTCGAAAATTGCCTCCGCTAGGGTCTTACAATTCATCGCCGTGGACGCGGAGTCAAAGCTTTTAATCGCGGAGAAGGAAGGCGTGGTAACCGAATTGCTGAAATCGGCGGCGCCGGAGAGAGATCCGGCGCTGATCGAGAACGCGCTGGCGAGTCTGGTGGCGATTTCAACGCCGAAGCGGAACAAGCTGAGGCTGGTGAATCTCGGAGCGGTGAAGACGCTGTCGAAGTTGTTGACGGAGCCGAATTCGGGCGCGGCGGTGGTGGAGAAGGTGCTGAAGCTGGTTGCAACGGCGTCGTCGACGAGGGAGGGGAGGAGGGAGATATGCGAGGACGCGGCGTGCGTTTCGGCGGTGCTGAACAAGGTTCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTTCGGGATCGCAAGGCGCAGGAGGCGGTCACGCAGGCCAACGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGTGCGCCGCAGGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTTAACTCCAAGTCATGCCTTTCGTGCTACGACACCAACACCACGCATATCATGCCGTTTTGA	1236	0.5623	MVRVRDDLCITVPSFFKCPISLDVMKSPVSLCTGVSYDRSSIQRWLDGGNNTCPATMQVLQTKDFIPNRTLHSLIQIWSDSVRHQTASEPVPSPDQALRAIADLQTDSLRFGSLAKLLHFAKDSHQNKLFLAKAEGFVNKLVRFLGNVDAGETARSIEFLEQVVIVLGLILENVEDREGLKNSMLKEKQQSLDSLLLVLRRGSSDSKIASARVLQFIAVDAESKLLIAEKEGVVTELLKSAAPERDPALIENALASLVAISTPKRNKLRLVNLGAVKTLSKLLTEPNSGAAVVEKVLKLVATASSTREGRREICEDAACVSAVLNKVLKVSSAATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTNTTHIMPF	411

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu1g2584	411	ProSiteProfiles	U-box domain profile.	11	85	IPR003613	GO:0004842\|GO:0016567
Ssu1g2584	411	SMART	Ubox_2	15	78	IPR003613	GO:0004842\|GO:0016567
Ssu1g2584	411	Gene3D	-	289	390	IPR011989	-
Ssu1g2584	411	SUPERFAMILY	RING/U-box	7	81	-	-
Ssu1g2584	411	Gene3D	-	92	288	IPR011989	-
Ssu1g2584	411	PANTHER	WDSAM1 PROTEIN	6	411	IPR045185	GO:0061630
Ssu1g2584	411	SUPERFAMILY	ARM repeat	106	393	IPR016024	-
Ssu1g2584	411	CDD	RING-Ubox_PUB	16	58	IPR045210	-
Ssu1g2584	411	Pfam	U-box domain	12	80	IPR003613	GO:0004842\|GO:0016567
Ssu1g2584	411	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED	6	411	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2584	Ssu-Chr1	70763279	70764514	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g2584	5	411	U-box Gene Family	AT5G64660	53.222	3.77e-148	425

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g2584	-		-	gmx:100801033	652.514

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g2843	5	74544192	74544626	Ssu1g2584	1	70763279	70764514	PCT

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