Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2584 ATGGTGAGAGTCAGAGACGATCTATGCATAACTGTTCCCAGCTTCTTCAAATGCCCCATCTCTCTCGATGTAATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCAGCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGGCGGCAACAACACCTGCCCCGCAACCATGCAGGTCCTCCAAACCAAAGACTTCATTCCCAACCGCACTCTACATAGCCTCATCCAGATCTGGTCCGATTCGGTCCGCCACCAAACCGCTTCCGAACCAGTCCCGTCCCCGGACCAAGCCCTCCGAGCCATCGCCGACTTGCAAACCGACTCCCTCCGGTTCGGCTCGCTCGCCAAACTGCTCCACTTCGCCAAAGACTCTCACCAAAACAAACTCTTCCTCGCGAAAGCGGAAGGCTTCGTGAACAAACTCGTTCGTTTCCTCGGCAATGTCGACGCCGGAGAAACCGCGAGGAGTATTGAATTTCTCGAACAAGTCGTCATCGTGTTAGGTTTAATTCTGGAGAACGTCGAAGATCGCGAGGGACTGAAAAACTCTATGTTGAAAGAAAAGCAACAAAGCTTGGATTCTCTGCTTCTCGTTCTGCGACGAGGAAGCTCCGATTCGAAAATTGCCTCCGCTAGGGTCTTACAATTCATCGCCGTGGACGCGGAGTCAAAGCTTTTAATCGCGGAGAAGGAAGGCGTGGTAACCGAATTGCTGAAATCGGCGGCGCCGGAGAGAGATCCGGCGCTGATCGAGAACGCGCTGGCGAGTCTGGTGGCGATTTCAACGCCGAAGCGGAACAAGCTGAGGCTGGTGAATCTCGGAGCGGTGAAGACGCTGTCGAAGTTGTTGACGGAGCCGAATTCGGGCGCGGCGGTGGTGGAGAAGGTGCTGAAGCTGGTTGCAACGGCGTCGTCGACGAGGGAGGGGAGGAGGGAGATATGCGAGGACGCGGCGTGCGTTTCGGCGGTGCTGAACAAGGTTCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTTCGGGATCGCAAGGCGCAGGAGGCGGTCACGCAGGCCAACGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGTGCGCCGCAGGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTTAACTCCAAGTCATGCCTTTCGTGCTACGACACCAACACCACGCATATCATGCCGTTTTGA 1236 0.5623 MVRVRDDLCITVPSFFKCPISLDVMKSPVSLCTGVSYDRSSIQRWLDGGNNTCPATMQVLQTKDFIPNRTLHSLIQIWSDSVRHQTASEPVPSPDQALRAIADLQTDSLRFGSLAKLLHFAKDSHQNKLFLAKAEGFVNKLVRFLGNVDAGETARSIEFLEQVVIVLGLILENVEDREGLKNSMLKEKQQSLDSLLLVLRRGSSDSKIASARVLQFIAVDAESKLLIAEKEGVVTELLKSAAPERDPALIENALASLVAISTPKRNKLRLVNLGAVKTLSKLLTEPNSGAAVVEKVLKLVATASSTREGRREICEDAACVSAVLNKVLKVSSAATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTNTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2584 411 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Ssu1g2584 411 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Ssu1g2584 411 Gene3D - 289 390 IPR011989 -
Ssu1g2584 411 SUPERFAMILY RING/U-box 7 81 - -
Ssu1g2584 411 Gene3D - 92 288 IPR011989 -
Ssu1g2584 411 PANTHER WDSAM1 PROTEIN 6 411 IPR045185 GO:0061630
Ssu1g2584 411 SUPERFAMILY ARM repeat 106 393 IPR016024 -
Ssu1g2584 411 CDD RING-Ubox_PUB 16 58 IPR045210 -
Ssu1g2584 411 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Ssu1g2584 411 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 6 411 - -
Ssu1g2584 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2584 Ssu-Chr1 70763279 70764514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2584 5 411 U-box Gene Family AT5G64660 53.222 3.77e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2584 - - gmx:100801033 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2843 5 74544192 74544626 Ssu1g2584 1 70763279 70764514 PCT