Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2583 ATGCTGATCTCTGATGAAGGAGATTGTGATGTGTTCTTTGACTCGGTGGATTGCCTGTCACCAACCCAGGAGTCTGTTTTGACAGAAGAAGAGTTTGGATATGAGATTTGGGTGAATGAGCCTGTGAGTGTGAAGGAAAGAAGGGAAAGGTTTTTGCAGGGGATGGGGTTGGCTGATGCTTCTTCCAAGGTTTGTTCTCGAGAGAATATGACGAGTTCTGATGCCTCATCAGTGAGTTTGGGACTGGAGAGGATCAGGGATACTGGAGCAGTCTCAAATGCTTGTGTTTTGCCTCGTGAACAAGTTGTTCTCTCGCGAAGAGAAGCAACATCTGAGGCACAAGGCTTGTTTGATGAACAGAAAGGATGCCCCAAAGATGAACCGGAAGCAAGTTTTGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCGAGAGGATAGACATAGAAAAGCTGAGGCTCGAGAAAAAATCCTGGGTTATGACATGGgcgaaaagaagaagaaaagctgGTGGAAGCACTTTATAAGCAGCAAGAAAGGAAGTGGAGGGAAAGTTGGATCAAAATTGAATTCAGGGACCAATAAAACTCGTAGAATAACTGTAAGGCAGAATAAAAAGAGATGGATGGAGTTCAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACAAAGGCCTAATTTGGACTATGAAATTTAGTCCCAATGGCCAAtatctggctagtggaggtgAAGATGGTGCTATCCGCATATGGCGTGTAACATCACTGAATACATCTAGTATTTGCTCCACTGCAGAAGACAGTGCGgttagtaaaatgaaaaatggcaTCTCTTGTTCTCAGAAGAAACACTCAAGCCAATCCTTCATTGTTCTTCCaaataagattttcaaaatcGAGGAATCGCCATTGCAAGAATTTTATGGTCATACCAGTGATGTCCTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTACGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGCAATCAATGTCTAAGTGTTTTCCATCACAAAAACTATGTGACTTGTATTCAATTCAACCCCGTTGATGAAAATTACTTCATCAGTGGTTCCATTGATGGCAAAGTTCGAATATGGGGGATACATGAAGAGCGAGTTGTTGACTGGGCAGACATACGAGATGTGATAAGTGCTATAAGTTATCGGCCAGATGGAGAAGGGTTTGTAGTCGGTTCCCTCACAGGCACTTGTCGCTTTTATGTTATCTCAGGCAAACATTTCCAGCTTGACGCACAGATTTGTGTCAATGGAAAGAGGAGAACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCAGAAGATTCCAGAGTTAGAATATTGGAAGGCGTTGAACTTGTTCAGACATATAAAGCCCTTCCAAGGTCCGGAAGTCAGATGTCTGGTTCATTTACTTCAGGTGGAGAACATATAATTTCAGTTGGAGAGGACTCTCGTGTGTATATTTGGAACTTCAATGACTTGGGAAATACTTCTTCCAAAAGTACAAAATCCAAGTATTCCTGTGAGTACTTTGGCTCTGAGGGGGTTACTGTTGCAATACCTTGGTCTGGCATGAGTGCAGAACAAAGGGACTCTGGCAATGATTTTACCCACTATTCTTCAGAAATGCAACACCAATTAGAGGCTGCTCATGGTCTTAGGGATTCGGAACGTTTTTCTTTTGGAAGTTGGTTCTCCATTGATGGTACGTGCCGAGGTTCTGTGACATGGCCCGAGGAGAAGCTTCCCAGTTGGGATTTACCTCTTgcagaatttgaatttgatcacCAGCAGCCATGTCTCAAAGATCCTTCCcatgaaaaaaatgtatcagAAACATGGGGACTATCCATTGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGAGTTCCTATTAGGCTTTAG 1992 0.4051 MLISDEGDCDVFFDSVDCLSPTQESVLTEEEFGYEIWVNEPVSVKERRERFLQGMGLADASSKVCSRENMTSSDASSVSLGLERIRDTGAVSNACVLPREQVVLSRREATSEAQGLFDEQKGCPKDEPEASFEGKVYEVSCTDREDRHRKAEAREKILGYDMGEKKKKSWWKHFISSKKGSGGKVGSKLNSGTNKTRRITVRQNKKRWMEFSALYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGAIRIWRVTSLNTSSICSTAEDSAVSKMKNGISCSQKKHSSQSFIVLPNKIFKIEESPLQEFYGHTSDVLDLAWSNSDTLLSSSTDKTVRLWKIGCNQCLSVFHHKNYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGEGFVVGSLTGTCRFYVISGKHFQLDAQICVNGKRRTSGNKITGIQFSQKNHQRVMITSEDSRVRILEGVELVQTYKALPRSGSQMSGSFTSGGEHIISVGEDSRVYIWNFNDLGNTSSKSTKSKYSCEYFGSEGVTVAIPWSGMSAEQRDSGNDFTHYSSEMQHQLEAAHGLRDSERFSFGSWFSIDGTCRGSVTWPEEKLPSWDLPLAEFEFDHQQPCLKDPSHEKNVSETWGLSIVAAGCDGTIKTFHNFGVPIRL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2583 663 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Ssu1g2583 663 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Ssu1g2583 663 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Ssu1g2583 663 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 663 - -
Ssu1g2583 663 SUPERFAMILY WD40 repeat-like 216 517 IPR036322 GO:0005515
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 389 IPR001680 GO:0005515
Ssu1g2583 663 Coils Coil 661 663 - -
Ssu1g2583 663 Pfam WD domain, G-beta repeat 343 379 IPR001680 GO:0005515
Ssu1g2583 663 Pfam WD domain, G-beta repeat 219 251 IPR001680 GO:0005515
Ssu1g2583 663 Pfam WD domain, G-beta repeat 302 338 IPR001680 GO:0005515
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 255 - -
Ssu1g2583 663 SMART WD40_4 341 380 IPR001680 GO:0005515
Ssu1g2583 663 SMART WD40_4 382 421 IPR001680 GO:0005515
Ssu1g2583 663 SMART WD40_4 436 472 IPR001680 GO:0005515
Ssu1g2583 663 SMART WD40_4 300 338 IPR001680 GO:0005515
Ssu1g2583 663 SMART WD40_4 213 252 IPR001680 GO:0005515
Ssu1g2583 663 SMART WD40_4 473 514 IPR001680 GO:0005515
Ssu1g2583 663 PANTHER WD REPEAT DOMAIN 44 1 663 IPR040324 -
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 347 IPR001680 GO:0005515
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Ssu1g2583 663 Gene3D - 209 544 IPR015943 GO:0005515
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 339 - -
Ssu1g2583 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2583 Ssu-Chr1 70723176 70726685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2583 200 400 Acyl Lipid Metabolism Gene Families AT3G18860 26.214 3.09e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2583 K20241 - gmx:100780979 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2844 5 74587876 74591787 Ssu1g2583 1 70723176 70726685 PCT