Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2582 ATGGCTCCGGCCGCCTCGTCCCCGTCGGCTCAGAGGCAAGTCGGCTTCAGCCGGCGCACGCAGGCGCCGCGCCAGCCGCGGCGCCTGCACGACTCGCCTCCGGTGAAAAAGTACCGGCTGCTGACGGAGATAATGGCGGGCGCGCCGTACGCGGTGGTGGAGAGAGAGAACTACAGCGACCTCGGGTGCGAGCAATGCGGCTCCGGCGAGGTGCCGGAGGAGCTCCTTCTGTGCGACAAATGCGACAGAGGATTCCACATGAAATGCGTGAGGCCAATCGTCGTGAGGGTTCCGATTGGATCCTGGCTGTGCCCTAAGTGCCAGGGAGAGAAGCGAGGGCGGACTTTCTCTCAGAAGAAACTAATCGATTTCTTCGGGATTCGGAGGAGCTCTGGTGATGCTAATGACAAGCTTTCTTCTCGGGATGCTAAGAAGCGTCGGAAACGTTCGGCACCTCTGGTattacataagaaaaagagGAGATTGTTACCATTTATTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTAAATATGGAATTCAGTGATCACCTCACATATTTGCCTGGAATGGCTCCTAGATCTGCGAATCAAGCCACACTAGAAAACGGTGGCATGCAGATTCTTTCCAAGGAAGATATGGAGACCGTAGAACACTGCAATGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCATGTGAAGGCTATACTGTTGAGGCTGATGACCCAATCAAGGATATGACGATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACCACCGGCAACGTGATGATTGTGACAGTATGATGACCCTTCTTATTGCAGCAGAAAGTTCTCAAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATAAACAGGAAGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTTAATGGTGAAGTCCGGGTCTTTTGGTTGCTACACGTGATATTTCTAAGGGGGAGAGgctttattatgattataatgGTCATGAGTATCAATACCCGACTCATCATTTTGTCTGAGGGGAAGACATAA 1140 0.4851 MAPAASSPSAQRQVGFSRRTQAPRQPRRLHDSPPVKKYRLLTEIMAGAPYAVVERENYSDLGCEQCGSGEVPEELLLCDKCDRGFHMKCVRPIVVRVPIGSWLCPKCQGEKRGRTFSQKKLIDFFGIRRSSGDANDKLSSRDAKKRRKRSAPLVLHKKKRRLLPFIPTKDPAQRLKQMGSLASALTALNMEFSDHLTYLPGMAPRSANQATLENGGMQILSKEDMETVEHCNAMSKRGEFPPFMVVYDSCEGYTVEADDPIKDMTIIAEYTGDVDYLDHRQRDDCDSMMTLLIAAESSQSLVICADKRGNIARFISGINNHKQEGKKKQNCKCVRYSVNGEVRVFWLLHVIFLRGRGFIMIIMVMSINTRLIILSEGKT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2582 379 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g2582 379 SMART PHD_3 62 108 IPR001965 -
Ssu1g2582 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 122 IPR013083 -
Ssu1g2582 379 Gene3D SET domain 146 352 IPR046341 -
Ssu1g2582 379 SUPERFAMILY FYVE/PHD zinc finger 49 110 IPR011011 -
Ssu1g2582 379 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g2582 379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 11 345 - -
Ssu1g2582 379 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Ssu1g2582 379 CDD PHD_RSF1 63 107 - -
Ssu1g2582 379 SUPERFAMILY SET domain 231 343 IPR046341 -
Ssu1g2582 379 Pfam PHD-finger 63 108 IPR019787 -
Ssu1g2582 379 PANTHER HISTONE ACETYLTRANSFERASE 11 345 - -
Ssu1g2582 379 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2582 Ssu-Chr1 70686009 70689754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2582 63 132 C2H2 Transcription Factor Family AT3G01460 37.143 3.95e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g2582 PHD 5.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2582 K24406 - gmx:100785817 598.201