Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2579 ATGACCATATTCCGCCTAATCTCAACCCTCGGATCCTTCCTCAAAACCATCCTCGAAACCACCCTCTTAACCATCATCGCCTTCACCCTGGCACTCCTCCCCCTCCTCTGCATCACCCTCCTCCTCCGCTTCCTCCTTTTTTCCACCGGGATCCATGACGCCTGCATGGCCACCCGCTTCCCTCCCCAATGCCACTCCTCCCTCCGCCGCCACCTCCACCATCTCCCCGTCCCGGAACAAGTCCTCCAATCCGCGATCACAGCCTCCTCCGAGAATCTCACCATCGCGCGATCCCAGGTGAAGTCCATCGTGGACGCCTCCGCAGGCAACCGCACCCGCCACACCGCCGCCAAGACCTGCCTCCAGTTCCTCCACTACTCCCACCGCCGCACCTCCCTCGCCGCCCGCGCGCTCCCTCTTGGCGCCATCAAAGACGCGCGCGCCTGGATGAGCGCCGCGCTCGCGTACCAGCACGACTGCTGGTCCGGCCTCAAGTACGTCAACGACACGGCACTGGTCGCCGAAACGGTGTCGTCTCTCGAATCTCTCACAATTCTCACCAGCAACGTGCTCAGCATGATGGTCTCCTTCGACCGCGTCGGAGAAGACACCGCTTCGTGGAAGCCGCCGAAGACGGAGCGCGACAGTTTCTGGGAGCACTCCGACACGAAAGGACCCGGGGCGGGACCCAAGATACCGGCGGAATTCACGGCGGACGTTACGGTGTGTAAGGGTAAGGGTGAAGGGTGTTACGAGACGGTGCAGGAGGCTGTTAATGCGGCGCCGGATAACGGGGATCGGAGGTTTGTGATACACATAAAGGAGGGGGTTTATGAGGAGAGGGTGAGGGTTCCGTTCAAGAAGAGGAATGTGGTGTTCTTGGGGGATGGCATGGGCAAAACTGTCATCACGGGATCTGCTAACGTGCGCCAGCCCGGCATAACAATCTACAACTCGGCCACCGTAGGGGTTGCTGGGGATGGATTTGTAGCAAAGGATCTCACGATCCAGAACACAGCTGGTTCTTATGCACACCAAGCAGTAGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATTGGCAATCAAGATACTCTTTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGTATACTAGGCAACGTGGACTTCATCATTGGGAACTCGGCATCAATCTTCCAAGACTGTGAAATCCTAGTCCGGCCCAGGCAAGCAAGGCCAGAGAAGGGAGAGAGCAATGCCATTACCGCACACGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCATCATTAATGGTACTGAGGAATACATGGCATTGTATTATAGCAAGCCTGAAGTTTACAGGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATCCATTCATTCTTGGAATCCCTTATCACACCACAGGGCTGGATGCTAGGGAGTGGGGATTTTGCGCTGAAAACACTTTATTATGGGGAATTCGAGAACTCAGGACCTGGTTCTAATCTGACTCGGAGGGTGCCCTGGAGTAACCAGGTCCCAGCAAAGCATGTGTTCTCATATTCAGCGCAGAGTTTCATTCAAGGAGATTATTGGAATCACACTAACTACACCTACATGAAAAAAAAGCCATTTTTTCCTTGA 1683 0.5431 MTIFRLISTLGSFLKTILETTLLTIIAFTLALLPLLCITLLLRFLLFSTGIHDACMATRFPPQCHSSLRRHLHHLPVPEQVLQSAITASSENLTIARSQVKSIVDASAGNRTRHTAAKTCLQFLHYSHRRTSLAARALPLGAIKDARAWMSAALAYQHDCWSGLKYVNDTALVAETVSSLESLTILTSNVLSMMVSFDRVGEDTASWKPPKTERDSFWEHSDTKGPGAGPKIPAEFTADVTVCKGKGEGCYETVQEAVNAAPDNGDRRFVIHIKEGVYEERVRVPFKKRNVVFLGDGMGKTVITGSANVRQPGITIYNSATVGVAGDGFVAKDLTIQNTAGSYAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRILGNVDFIIGNSASIFQDCEILVRPRQARPEKGESNAITAHGRTDPAQSTGFVFQNCIINGTEEYMALYYSKPEVYRNYLGRPWKEYSRTVFIHSFLESLITPQGWMLGSGDFALKTLYYGEFENSGPGSNLTRRVPWSNQVPAKHVFSYSAQSFIQGDYWNHTNYTYMKKKPFFP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2579 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Ssu1g2579 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 40 191 IPR006501 GO:0004857
Ssu1g2579 560 Pfam Pectinesterase 239 543 IPR000070 GO:0030599|GO:0042545
Ssu1g2579 560 MobiDBLite consensus disorder prediction 204 231 - -
Ssu1g2579 560 MobiDBLite consensus disorder prediction 204 221 - -
Ssu1g2579 560 CDD PMEI-like_3 54 194 - -
Ssu1g2579 560 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 34 546 - -
Ssu1g2579 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 194 IPR035513 -
Ssu1g2579 560 Gene3D - 233 555 IPR012334 -
Ssu1g2579 560 Pfam Plant invertase/pectin methylesterase inhibitor 51 193 IPR006501 GO:0004857
Ssu1g2579 560 SMART PMEI_2 46 193 IPR006501 GO:0004857
Ssu1g2579 560 PANTHER PECTINESTERASE 34 546 - -
Ssu1g2579 560 SUPERFAMILY Pectin lyase-like 238 551 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2579 Ssu-Chr1 70638249 70640735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2579 51 545 Carbohydrate Esterase AT5G09760 64.229 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2579 - - gmx:100802102 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2849 5 74729056 74731578 Ssu1g2579 1 70638249 70640735 PCT