Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2578 ATGAAGATGGAATTTAGGTTTCTggtgatttatttgtttttgttaattcagAGCACACTGCATTGGTCAAAGAGAAGCATTACGGTTTTGGCAAGTGAGATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGATGACCCTGAATTTGCACCTGATAGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGATGTTGCCGGCAGCAATAGTTCAAAGTGGTCTTATTTAGAAGGAGGTGATAAATTAAAGCCTGGTACGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGTGGAGGTTCAAATAAGGATGATATTATGAATAAAGACTATAGAGTTTTGGATGCAACAATTGAATGGGATGAGGATGGAAGTTACAGCAAGAAAATGTCTCCTGGGTTTGAGGAATGGAAACATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCAGTCAGGAGTAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGAATGCGGGCACCTTGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCTTCATGATAATCCAAATCACGAGGATAGTTGGGAAAATAAGTGCAGGGAAGATGGAGCTCCAAGATATTCTGCTCCTCACGAGAGTAGAGACCATTCTCTTAAGAGTGGTAGGTCTAGTGAAGCTTGTATTAATTTTGCAAAAGGCAGGTGCAGAATGGGAGCATCATGCAAGTTTGTGCATCATAGCAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTCTTGAGCATGGTGGTGGGTACGGCCAAAACCGTAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATGCTGGGGGAGATTATCATATGTTGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTAATAGGAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAGAGTTTGGGACAGTCCAAAGCGGAATGATACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGGTGCCACAGAGCCGGGATTCACTCCTTTGCCTACAAGGGATGCATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAACCATTTTCAAGTGATAAGAAGGAAGCTGATGGTTGGATAGCAGGAAATACTGCTGCCAACATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGGGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAAAATAAGCATGGGATAACGCAGGGTGGTATGTATTTAGCCACCTCTGAGCATGACAGAATACAAATTGATCCAGGACAAGGCTTTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAAGCTGCCAATCAGTTGGACAAATTCAAGTAGCAGTTCCCATTCTTCCTTCAAAGGGAGGAATTGTTGATGGTATGCCAAACCGGGAAGTCTCTACAGAGAAAGAGTACAGTGCTGAACCAAATGTCATGGATGCAGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCAACTGAGAATGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCTCATATCCTTGGGACAGGGCAACAGCTGCCGCAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACATGTCCTCCCTAGCAAAAACTGAGGTGCCTGCTATACCTGTTTCCAAGACATTCATCAGGCCAGATCCTGCTGTTGGACTCCCGAAGCAGTATGATCTGATGTGTGATAGTATTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACCCCCAGTCATTCCTTCGAGTAAAAAAGTTGCAGAACATGTATTGGAAATTCAGTCACAATTGTCCAACACAGCAAGTCAAAATTGTGGCAATTCTTCCAAGGCGGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAGCAGGGTCAAAACACGGGGGTTAATAAGGATAATAACAAGGAAGTGTTACTTGAGCAAAGGCAAAAATCTCAAGATGATCCTAAAAGTACCAAAGAGAATAACGGTCCTTTGGAAAACATGGACCAAACTGGTGGTCCTGATGAGGCCAAGAAAACGAAGGATATGAAGGGGAGTCGTGCATTTAAATTTGCATTGGTTGAGTTCGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGAGCCAATATTCCTCAGACACAAGAGAAAATTGATCactatttgtcattttcaaaaccaaagcTTAACAAACTTGTACAGATGAAAGCGAATATTGATGAagctaaccattga 2646 0.4187 MKMEFRFLVIYLFLLIQSTLHWSKRSITVLASEMSGSGKKRSSKWDLRDDPEFAPDSKQLRSGWSSADVAGSNSSKWSYLEGGDKLKPGTGFSSKEPFSGGGGSNKDDIMNKDYRVLDATIEWDEDGSYSKKMSPGFEEWKHKRHSQSPKNGWSRSVRSSRSRSPPHGFRWDSGVNDRNRMRAPCRDFAAGKCRRGSHCHFLHDNPNHEDSWENKCREDGAPRYSAPHESRDHSLKSGRSSEACINFAKGRCRMGASCKFVHHSNSDGHGKVSVDELTREREIDRRHRDSSLEHGGGYGQNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNAGGDYHMLDRPKLSDSVSPNRRPRDDRWGSDGNKADADRVWDSPKRNDTVAVSDTAKLVEDKSENVGATEPGFTPLPTRDAWGHSLDKSRVHGEQPFSSDKKEADGWIAGNTAANMHGSQSIGTDIWLGDDAKMSPDWDYRVGSSSCIEEKHEQNKHGITQGGMYLATSEHDRIQIDPGQGFNQNAESLNPLHSSSCQSVGQIQVAVPILPSKGGIVDGMPNREVSTEKEYSAEPNVMDAGLSQVSSRNPPPTENVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKDMSSLAKTEVPAIPVSKTFIRPDPAVGLPKQYDLMCDSIEPKSAVASGVPPVIPSSKKVAEHVLEIQSQLSNTASQNCGNSSKAAGSEELVKSDPLIQLQQGQNTGVNKDNNKEVLLEQRQKSQDDPKSTKENNGPLENMDQTGGPDEAKKTKDMKGSRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGSMQGANIPQTQEKIDHYLSFSKPKLNKLVQMKANIDEANH 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2578 881 MobiDBLite consensus disorder prediction 88 109 - -
Ssu1g2578 881 SMART c3hfinal6 180 205 IPR000571 GO:0046872
Ssu1g2578 881 SMART c3hfinal6 302 328 IPR000571 GO:0046872
Ssu1g2578 881 SMART c3hfinal6 239 264 IPR000571 GO:0046872
Ssu1g2578 881 ProSiteProfiles Zinc finger C3H1-type profile. 302 329 IPR000571 GO:0046872
Ssu1g2578 881 MobiDBLite consensus disorder prediction 137 176 - -
Ssu1g2578 881 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Ssu1g2578 881 MobiDBLite consensus disorder prediction 59 75 - -
Ssu1g2578 881 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 34 871 - -
Ssu1g2578 881 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
Ssu1g2578 881 ProSiteProfiles Zinc finger C3H1-type profile. 238 265 IPR000571 GO:0046872
Ssu1g2578 881 Gene3D - 176 276 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 341 427 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 759 773 - -
Ssu1g2578 881 Gene3D - 297 353 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 266 298 - -
Ssu1g2578 881 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 263 IPR000571 GO:0046872
Ssu1g2578 881 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 204 IPR000571 GO:0046872
Ssu1g2578 881 MobiDBLite consensus disorder prediction 759 796 - -
Ssu1g2578 881 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 34 871 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 37 75 - -
Ssu1g2578 881 Pfam CCCH-type zinc finger 307 327 IPR041367 -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 354 391 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 266 293 - -
Ssu1g2578 881 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2578 Ssu-Chr1 70593934 70597830 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g2578 zf-CCCH 0.00011 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2578 - K22909 gmx:100783856 1462.59