Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2577 ATGGATACCAACCAAAACACCACTACTACATTCACAAACATTGTCAACAGCACTTGGAATCACGAGAAGATGGGAACAGATGAACATAACATCATCCTCCATGATCATCCCCAAATTCCAATGGGTGTTGGAATTTGGCCcaactaccaccaccaccaccttcagATACAACCCTCATTCTCATCCAGCGTGGCACCCTCTTCAAGTAATTTCCTCACCGACGTGCTAGGAATCCAGtttgaagaagaagatgaagatgggGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAAATGGCAGCGATGCAACCCGTGGACATAGACCCAGCCAGCGTGAGAAAACCAAAGAGGCGAAACGTGCGCGTAAGCGATGACCCTCAGAGTGTGGCTGCACGGCACAGGCGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTCCCTGGTGGCTCCAAAATGGACACCGCTTCCATGCTAGATGAAGCCATTCGCTATGTGAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCAACTCCACCACgctcacaacaacaacaaccacctCCAATTAATTGCATTGGAACTGCTCCTAATACTGATTGGCCTTTGGCACCAATTATGTTGCACGGTTCCACCTCCGTTGACATGCCTGTTGGAATGGAATTCAACACCCATGGCCATGTCGGTGATGCCTTTTCGATCCACCTTGAACAATCATGA 735 0.4381 MDTNQNTTTTFTNIVNSTWNHEKMGTDEHNIILHDHPQIPMGVGIWPNYHHHHLQIQPSFSSSVAPSSSNFLTDVLGIQFEEEDEDGEEELGAMKEMMYKMAAMQPVDIDPASVRKPKRRNVRVSDDPQSVAARHRRERISEKIRILQRLVPGGSKMDTASMLDEAIRYVKFLKRQIRLLQSTPPRSQQQQPPPINCIGTAPNTDWPLAPIMLHGSTSVDMPVGMEFNTHGHVGDAFSIHLEQS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2577 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 214 - -
Ssu1g2577 244 CDD bHLH_AtIND_like 125 182 - -
Ssu1g2577 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 214 IPR045843 GO:0003700|GO:0006355
Ssu1g2577 244 SMART finulus 130 179 IPR011598 GO:0046983
Ssu1g2577 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 191 IPR036638 GO:0046983
Ssu1g2577 244 MobiDBLite consensus disorder prediction 116 136 - -
Ssu1g2577 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Ssu1g2577 244 Gene3D - 127 192 IPR036638 GO:0046983
Ssu1g2577 244 Pfam Helix-loop-helix DNA-binding domain 134 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2577 Ssu-Chr1 70567127 70567861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2577 91 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 76.724 7.78e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2577 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2577 - - gmx:100779374 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2851 5 74787453 74788259 Ssu1g2577 1 70567127 70567861 PCT