Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2575 atggcTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGCTGCGGTCGCATGGGAAGCCGGAAAACCATTGGTGATAGAGGAAGTTGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTCTCAAGATCTTGTTCACCTCTCTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGGGACAGACACCTTTATTTCCACGTATATTTGGTCATGAAGCAGGAGGAATTGTGGAAAGTGTTGGTGAGGGTGTGACGGATCTCAAACCCGCTGATCATGTACTTCCAGTGTTCACTGGGGAGTGCAAGGAGTGTGCCCACTGTAAATCAGAGGAAAGCAACATGTGTGACCTCCTAAGGATTAACACTGACCGTGGAGTGATGTTGAATGATGGCAAGTCAAGGTTTTCTATCAATGGACAACCAATATACCACTTTGTGGGAACCTCCACCTTCAGTGAATACACTGTAGTCCATGTTGGTTGTGTTGCCAAGATCAACCCCGCTGCCCCACTTGACAAAGTTTGTGTACTGAGCTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCAAAACCAATCAAAGGTTCATCAGTGGCTGTATTTGGATTGGGAGCCGTGGGCCTTGCTGCTGCTGAGGGAGCTAGACTTGCTGGTGCTTCCAGGATAATTGGGATTGACTTGAATTCTAAGAGATTTACTGAAGCAAAGAAGTTTGGAGTTACTGAGTTAGTGAATCCAAAAGATTATGACAAGCCAGTTCAAGAGGTGATTGTTGAAATGACTGGTGGGGGAGTTGACCGAAGTGTTGAGTGTACTGGAAGTATCAGTGCTATGATCTCTGCATTCGAATGCGTGCATGATGGATGGGGAGTTGCTGTACTTGTTGGTGTGCCAAATAAAGATGATGCTTTCAAAACTCATCCAATTAATGTCTTGAACGAAAAGACTCTGAAGGGTACTTTCTTTGGCAACTATAAACCACGTTCTGACCTCCCATCAGTGGTGGAGATGTACATGAACAAGGAACTTGAACTGGAGAAATTTATCACCCATGAAGTACCTTTCGCAGAAATCAACAAAGCCTTTGAGTACATGCTTAAAGGGGAGAGCCTGCGTTGCATAATCCGCATGACTGcatag 1146 0.4529 MASTTAGKVIRCKAAVAWEAGKPLVIEEVEVAPPQANEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPADHVLPVFTGECKECAHCKSEESNMCDLLRINTDRGVMLNDGKSRFSINGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGATLNVAKPIKGSSVAVFGLGAVGLAAAEGARLAGASRIIGIDLNSKRFTEAKKFGVTELVNPKDYDKPVQEVIVEMTGGGVDRSVECTGSISAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPINVLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFAEINKAFEYMLKGESLRCIIRMTA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2575 381 PANTHER ALCOHOL DEHYDROGENASE 4 379 - -
Ssu1g2575 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Ssu1g2575 381 Pfam Alcohol dehydrogenase GroES-like domain 37 162 IPR013154 -
Ssu1g2575 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Ssu1g2575 381 Gene3D - 20 371 - -
Ssu1g2575 381 PANTHER ALCOHOL DEHYDROGENASE 1 4 379 - -
Ssu1g2575 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Ssu1g2575 381 CDD alcohol_DH_plants 10 378 - -
Ssu1g2575 381 Gene3D - 184 322 - -
Ssu1g2575 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Ssu1g2575 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2575 Ssu-Chr1 70542611 70546331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2575 37 371 Monolignol Biosynthesis Gene Families AT1G72680 25.731 1.84e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2575 K18857 - gmx:100783318 721.079