Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2572 ATGATGAGTGTCCCTATGTCCCTCATTGCTGTCATTAACCTTAAAGTCCCTGAGGCCATATGGCAAGATGGTTCCAACGCTCCCCTCTCCGCAGCCCAAATTCTGGACCGCATCCGTCCCCACGGCAGCGGCGATGCCGACAACCTCCAGCGCGTCCTCCGCTTGCTCACCAGCTACGACATCTTTGTCGAGCACTTGTGCAGCAGCGGCCAAAGGAAATACTCCCTCACTGACATCGGAAAAACTCTCGCTGACAATCACCAAGGTCTATCCTACGCATATTACATGCTCCAGCACCATcagGATGCCTTGATGCGAACTTGGCCGTTGGTGGGGGAAGCAGTGGAGGATCCAACGGTGGACCCATTTTTGAAGGCGAACCAAGAATCAACGATAGAATACTACACGAAGAGACCAGAGGAAATGAACTTGATTCATAAGGCCTTCGCTGGGATGTCTGGACCCTTCATGAGGGAAATGCTGGAAGTCTATGACGGCTTCCAAGGAGTGGAAACACTAGTTGACGTTGGTGGCAATTCCGGTATCTGTCTTCGCATGATCATGGAGAAATATCCTAACGTGCGCAAGGGCATCAACTATGACCTGCCCGACATGCTGGCCAGTGCACCCTACATTCCAGGTGTAACACATGTTGGTGGTAATGCTTTTGAATCTGTTCCCTTTGGGGATGCTATCTTCATCAAGTGGGCATTTTTAGGGTGGACAGATGAGCAATCCAAGCTAGTCTTAGAGAATTGTTACAAGGCACTTCCAGAGGACGGAAAATTGATTGTTTGCGAACCCGTGGTGCCAGACCTGACAGATGAGAGTCACCGAACAAGAGCATTGCTGGGTGGTGACATATTCGTGATGACAATGCATAAAGGGAAGCATAGGACTGAACAACAATTTAAACAGCTCGGCATTTCTACTGGTTTTCCTCGTTTCCGTGCCTTCTATGTTGATTCTTATTTCGCTGTACTTGAGTTTCAAAAAGGAGTAGTATACTAA 1011 0.4866 MMSVPMSLIAVINLKVPEAIWQDGSNAPLSAAQILDRIRPHGSGDADNLQRVLRLLTSYDIFVEHLCSSGQRKYSLTDIGKTLADNHQGLSYAYYMLQHHQDALMRTWPLVGEAVEDPTVDPFLKANQESTIEYYTKRPEEMNLIHKAFAGMSGPFMREMLEVYDGFQGVETLVDVGGNSGICLRMIMEKYPNVRKGINYDLPDMLASAPYIPGVTHVGGNAFESVPFGDAIFIKWAFLGWTDEQSKLVLENCYKALPEDGKLIVCEPVVPDLTDESHRTRALLGGDIFVMTMHKGKHRTEQQFKQLGISTGFPRFRAFYVDSYFAVLEFQKGVVY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2572 336 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 332 IPR016461 GO:0008168
Ssu1g2572 336 Pfam O-methyltransferase domain 111 313 IPR001077 GO:0008171
Ssu1g2572 336 SUPERFAMILY "Winged helix" DNA-binding domain 3 87 IPR036390 -
Ssu1g2572 336 PANTHER O-METHYLTRANSFERASE 1 331 IPR016461 GO:0008168
Ssu1g2572 336 PIRSF O-mtase 1 332 IPR016461 GO:0008168
Ssu1g2572 336 Gene3D - 1 88 IPR036388 -
Ssu1g2572 336 Gene3D Vaccinia Virus protein VP39 89 332 IPR029063 -
Ssu1g2572 336 PANTHER OS02G0823400 PROTEIN 1 331 - -
Ssu1g2572 336 CDD AdoMet_MTases 172 266 - -
Ssu1g2572 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 90 329 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2572 Ssu-Chr1 70460109 70470182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2572 1 332 Monolignol Biosynthesis Gene Families AT3G53140 59.467 1.94e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2572 - - ccaj:109819366 518.464