Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2571 ATGATGAGTGTCCCTATGTCCCTCATTGCTGTCATTAACCTTAAAGTCCCCGAGGCCATATGGCAAGATGGTTCCAACGCTCCCCTCTCCGCAGCCCAAATTCTGGACCGCATCCGTCCCCACGGCGGCGGCGACGCCGAGAACCTCCAGCGCGTCCTCCGCTTGCTCACCAGCTATGACATCTTTGTCGAGCACTTGTGCGGAAGTGGCCAAAGGAAATACTCCCTCGCTGACGTCGGAAAAACCCTCGTTGACGATCACCAAGAGTCACCAATTGAGTACTACGTGAAGAGGCCAACTGAAATGGCCTTGTATTATAAATCCATGGCTGGGATGTGTGTACCCTTCATGAGGGAAATGCTGGAAGTTTACGATGGCTTTCAAGGAGTGGAAACACTAGTTGATGTTGGTGGCAATTTTGGTGTCACTCTCCGCATGATCATGGACAAATACCCTAATGTGCGCAAGGGCATCAACTATGACTTGCCTGGCATAGTGGCCAGTGCACCGGACATTTCAGGTGTAACACATGTTGGTGGTAACGCGTTTGAATCTGTTCCCTTGGGGGATGCTATCTTCGTCAAGTTGGCAGTGGTGGCAATAACGATGATGGTAatagtggtggcaatggtggtggtggtagcgatgACAATGCTGGTAGTGGcaggtgacagtggtggtgatgatggcgACGACGCAGCAATGGCAATAACGATGGTGATGTTGGTGGAGGcgacgacaatggtggtctcatga 756 0.4563 MMSVPMSLIAVINLKVPEAIWQDGSNAPLSAAQILDRIRPHGGGDAENLQRVLRLLTSYDIFVEHLCGSGQRKYSLADVGKTLVDDHQESPIEYYVKRPTEMALYYKSMAGMCVPFMREMLEVYDGFQGVETLVDVGGNFGVTLRMIMDKYPNVRKGINYDLPGIVASAPDISGVTHVGGNAFESVPLGDAIFVKLAVVAITMMVIVVAMVVVVAMTMLVVAGDSGGDDGDDAAMAITMVMLVEATTMVVS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2571 251 Pfam O-methyltransferase domain 92 195 IPR001077 GO:0008171
Ssu1g2571 251 PANTHER OS02G0823400 PROTEIN 89 199 - -
Ssu1g2571 251 PANTHER OS02G0823400 PROTEIN 1 87 - -
Ssu1g2571 251 PANTHER O-METHYLTRANSFERASE 1 87 IPR016461 GO:0008168
Ssu1g2571 251 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 201 IPR029063 -
Ssu1g2571 251 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 251 IPR016461 GO:0008168
Ssu1g2571 251 PANTHER O-METHYLTRANSFERASE 89 199 IPR016461 GO:0008168
Ssu1g2571 251 Gene3D - 1 93 IPR036388 -
Ssu1g2571 251 SUPERFAMILY "Winged helix" DNA-binding domain 2 86 IPR036390 -
Ssu1g2571 251 Gene3D Vaccinia Virus protein VP39 94 243 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2571 Ssu-Chr1 70404370 70437962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2571 1 202 Monolignol Biosynthesis Gene Families AT3G53140 50.000 1.07e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2571 - - ccaj:109819366 291.197