Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2570 ATGCGATTCGGGAACCCGCGGGTGCCCATGCCGGAAAACCAGCCTGAGAAGAAGCACTATCTAGGAGTCCAGATCCCAAAGgataaaatggAGATGGATGTTGAAGCATACCTAAGAAGACGTTTTGAAAGTCAGATTGCAGATATTGAAGTTGTAGAGAATGAAGACCTGGATCTTGCTGTTATGGCAGAAGCACGATCTCAACAAGCTGCTTCCATGACTGAGTTCCACTGGCTTGGCCATAGGTTTCCAATATCAAATGCAAAAACAAAGGAGTTGGAGAAAGACATACATGGTCCCTTGACAGACACATCTCCAGCAGACAAAAGACTTggtatttttgacaaaatctttTCTGCTTATCACGAAGCCAAAGGCTACATTCGGACTGATTTGgCCATTGCAGAAAGTGTGAAAGATGACTTAACTGGTCTTGATAAGGCGATTCGTGTTGTATTAGGAGAAAGAACCATTGAACGTAACCTCTTATTGGCTAAGGTTGCAAAAAGTAAGCTTGCTAGGCGTCATGatgataaaaatgagaaagtcACCAAACCTGAGGAGCTTGTTTGCTTATATGATGTCCTGCTACATgcctcagttggccCAACACTCAAGCCACTTCACGCTTTGTCGTTCGAGGCTTTTGGGATTGGTGTTACGTTTTGGGCCTCAATCGGCCCAATACTCAAGCCACTTCACACTTTGTCGCTCAAGGCTTTCGAGACTAGTGTTACGTACTGGGCCTTGGTTTGCCTAACTCAAGCCACTTCACGCTTCGCCACTTGA 789 0.4208 MRFGNPRVPMPENQPEKKHYLGVQIPKDKMEMDVEAYLRRRFESQIADIEVVENEDLDLAVMAEARSQQAASMTEFHWLGHRFPISNAKTKELEKDIHGPLTDTSPADKRLGIFDKIFSAYHEAKGYIRTDLAIAESVKDDLTGLDKAIRVVLGERTIERNLLLAKVAKSKLARRHDDKNEKVTKPEELVCLYDVLLHASVGPTLKPLHALSFEAFGIGVTFWASIGPILKPLHTLSLKAFETSVTYWALVCLTQATSRFAT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2570 262 Pfam RNA-binding signal recognition particle 68 47 198 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Ssu1g2570 262 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 54 198 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2570 Ssu-Chr1 70391845 70400272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2570 27 59 Core DNA Replication Machinery Family AT1G08260 75.758 5.81e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2570 K03107 - gmx:100816486 220.32