Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2569 ATGGGAGAGGTGAAGGAAACAATGGAGATGAAGAAGGATGTTACCAATACCAATACCATTGCAAGGTCTgaaaacaaagctagacttgccATTATGGAACTAGCCCACATGATGAGTGTCCCTATGTCCCTCATTGCTGTCATTAACCTTAAAGTCCCCGAGGCCATATGGCAAGATGGTTCTAACGCTCCCCTCTCCGCAGCCCAAATTCTGGACCGCATCCGTCCCCACGGCGGCGGCGACGCCGAGAACCTCCAGCGCGTCCTCCGCTTGCTCACCAGCTATGACATCTTTGTCGAGCACTTGTGCGGAAGTGGCCAAAGGAAATACTCCCTCACTGACGTCGGAAAAACTCTCGTTGACGATGACCACGGTTTATCCTACGCATATTACATGCTCCAGCACCATcagAGTGGGTTGATGCAAGCTTGGCCGTTGGTGGGAGAAGCGGTGGAAGATCCAACAAGGGAACCATTTGAGAAGGTGAATGAAGAGTCAACAATCGAGTACTATGCAAAGAGGCCAACTGAAATCGCCTTGTATCATAAAGCCATGGCTGGGATGTGTATACCCTTCATGAGGGAAATGCTGGAAGTTTACGACGGCTTTCAAGGAGTAGAAACGCTAGTTGATGTTGGTGGCAATTCTGGTGTCAGTCTCCGCATGATCATGGACAAATACCCTAATGTGCGCAAGGGCATCAACTTTGACTTGCCTAGCATGGTGGCCAGTGCACCGAACATTTCAGGTACCTACGTCCCTGTATATATTTTggaggtttaa 783 0.4751 MGEVKETMEMKKDVTNTNTIARSENKARLAIMELAHMMSVPMSLIAVINLKVPEAIWQDGSNAPLSAAQILDRIRPHGGGDAENLQRVLRLLTSYDIFVEHLCGSGQRKYSLTDVGKTLVDDDHGLSYAYYMLQHHQSGLMQAWPLVGEAVEDPTREPFEKVNEESTIEYYAKRPTEIALYHKAMAGMCIPFMREMLEVYDGFQGVETLVDVGGNSGVSLRMIMDKYPNVRKGINFDLPSMVASAPNISGTYVPVYILEV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2569 260 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 260 IPR016461 GO:0008168
Ssu1g2569 260 Gene3D Vaccinia Virus protein VP39 125 256 IPR029063 -
Ssu1g2569 260 PANTHER OS02G0823400 PROTEIN 20 250 - -
Ssu1g2569 260 Pfam O-methyltransferase domain 147 248 IPR001077 GO:0008171
Ssu1g2569 260 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 248 IPR029063 -
Ssu1g2569 260 SUPERFAMILY "Winged helix" DNA-binding domain 24 122 IPR036390 -
Ssu1g2569 260 PANTHER O-METHYLTRANSFERASE 20 250 IPR016461 GO:0008168
Ssu1g2569 260 Gene3D - 13 124 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2569 Ssu-Chr1 70378220 70379652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2569 18 250 Monolignol Biosynthesis Gene Families AT3G53140 59.072 8.31e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2569 - - ccaj:109819366 390.193