Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2562 ATGCCCACTTGGTGGGGTAGGAAGTCCAGCAAGAGCAAGGAGCAAGAAGAGCAGCAGCCACATGGCGCCGCCTGCGTGCTTCCTTTCAACTTCATCAAGTCCAACAGCGCCGCCAAGCCCAAGAAGGGAAGGCCCGACAAGCCCAAGAGCTTCGACGACGCCGTCAGGAACTCCCCCCGCGCCAGCCGCGATTTCACCTCCTCCGCCGCCGACTCCGACGCCGCCGAGAAGCGAGGCCTTCCCTTGCCTCGCCCCTCCGTTTCCTCCACCCAAAGCTTCGGCAACGACCAAGCCCTCGCTTTCGGATCTGCCTCTGTTTCCGGTTCCAGCGTCAGCTCCAGTGGCTCCTACGATGATCACCCAACCTATCACTCTCAGATTAATGGCGCCAgAGGGCAAGGTGACATGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACAAGCCCAACATCGCCTCTTCATCAGAAGTTGCATGTGTTGAGTCTTGACTCCCCTACTGGTAGGCAAGAAGATGGAAGGAGTGAATGTCATCCATTGCCTCTTCCACCAGGTTCTCCTACTAgtccttcttcttctctttccaaCACAAGAGCAAATGGAATGACAGAACACCCTACCGGTAACCTTTCCAAGTGGAAGAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACTTGGGATTCAATAGTGATAGTGGACATTTGTGTGCAATAAAAGAAGTCAGGGTTGTCTGTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAgGAAATCAATTTGCTCAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAGCACTTTCTGTTTATTTGGAATATGTTTCTGGTGGTTCTATTCATAAATTACTCCAGGAGTATGGAACCTTCAAGGAGCCCgttattcaaaattatactaGGCAGATTGTCTCTGGACTTTCCTATCTTCACGGGAGAAATACAGTTCATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATGCTTCTGCCTCGATGCTTTCTTTCAAAGGGAGCCCATATTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTACGGTCTTTCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCtgcaatatttaaaattggtaACAGCAAAGATATGCCTGAAATTCCGGATCATCTCTCAAGTGAGGCAAAGAATTTCATTCAGCAATGCTTACAAAGAGATCCATCAGCCCGCCCAACAGCCCAAATGTTACTAGATCATCCCTTTATTCGAGATCAGTCAGCAACAAAAGCTACAAATGTCAGAATAATGAGGGATGCTTTTCCTTACATGTTTGATGGAAGTCGGACACCACCGCCAGTTTTAGATCATTCCCATAGAACAAGTATAACACTGGATGGAGATTATGCAACAAAGCCAGTTCCTGTAACTTCCCGAGCAGTAAGGAGCCCAAGagataacacaagaatgATCACTTCTTTACCGGTGTCTCCCTGTTCAAGTCCATTGCGACAGTACGGGCCAGCACACCAGAGCTGTTTCCTTTCTCCTCCTCACCCAACTTACACAATGATGGGACAAAATACCCTCCCGTCATATCCAGTGAGATCAAATGCCCCATTCACTCTTGATCCTTGGCATGAAACACCTTTTTACAAACCCCACACACCTGGTGGATCCCCAAGAACCAGACTCATTTGA 1854 0.4606 MPTWWGRKSSKSKEQEEQQPHGAACVLPFNFIKSNSAAKPKKGRPDKPKSFDDAVRNSPRASRDFTSSAADSDAAEKRGLPLPRPSVSSTQSFGNDQALAFGSASVSGSSVSSSGSYDDHPTYHSQINGARGQGDMKFNVRSKSPGPGSRGPTSPTSPLHQKLHVLSLDSPTGRQEDGRSECHPLPLPPGSPTSPSSSLSNTRANGMTEHPTGNLSKWKKGKLLGRGTFGHVYLGFNSDSGHLCAIKEVRVVCDDQTSKECLKQLNQEINLLSQLSHPNIVQYYGSDLGEEALSVYLEYVSGGSIHKLLQEYGTFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINASASMLSFKGSPYWMAPEVVMNTNGYGLSVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPDHLSSEAKNFIQQCLQRDPSARPTAQMLLDHPFIRDQSATKATNVRIMRDAFPYMFDGSRTPPPVLDHSHRTSITLDGDYATKPVPVTSRAVRSPRDNTRMITSLPVSPCSSPLRQYGPAHQSCFLSPPHPTYTMMGQNTLPSYPVRSNAPFTLDPWHETPFYKPHTPGGSPRTRLI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2562 617 Pfam Protein kinase domain 219 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2562 617 PANTHER MAP KINASE KINASE KINASE 1 599 - -
Ssu1g2562 617 ProSiteProfiles Protein kinase domain profile. 218 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2562 617 MobiDBLite consensus disorder prediction 194 212 - -
Ssu1g2562 617 MobiDBLite consensus disorder prediction 39 59 - -
Ssu1g2562 617 MobiDBLite consensus disorder prediction 84 129 - -
Ssu1g2562 617 MobiDBLite consensus disorder prediction 1 219 - -
Ssu1g2562 617 MobiDBLite consensus disorder prediction 146 163 - -
Ssu1g2562 617 CDD STKc_MEKK1_plant 217 474 - -
Ssu1g2562 617 SUPERFAMILY Protein kinase-like (PK-like) 216 567 IPR011009 -
Ssu1g2562 617 Gene3D Transferase(Phosphotransferase) domain 1 215 493 - -
Ssu1g2562 617 ProSitePatterns Protein kinases ATP-binding region signature. 224 247 IPR017441 GO:0005524
Ssu1g2562 617 SMART serkin_6 218 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2562 617 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2562 Ssu-Chr1 70151017 70156418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2562 1 536 MAP Kinase Kinase Kinase AT1G53570 58.439 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g2562 Pkinase 2.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2562 K04421 - gmx:100813122 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2862 5 75002819 75007913 Ssu1g2562 1 70151017 70156418 PCT
Ssu5g3069 5 78203671 78209472 Ssu1g2562 1 70151017 70156418 PCT