Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2559 ATGAATTTCCCTTATCTCACTCGCTTCCCCGAACGTCTCGTTGCTCCTCTTTATGCCACAGTTCCCGCTACCACTAGCAGGAGCAATAGAGCGGAGAGTTTTGCAATTGAAGGGCGTAATCTGAAATTCTCATTCACGACAAGGCAAACACAGGATGTTCCGGTTCTTAGGGACTGTTCGGTTCGAATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGAACAGTGTACGTGAATGAGCCTAAAAGTTTCGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACTGTAGATGCTGATGTTGCATTTGGTCTCGGTAAGATCAATTTGAACCATGATGAAGTCAGATATAGGGTGTCAAAAGCTTTGAATGCTGTAGGTCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGCGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAACTGACCAGGTTGGGGTTATCACAGCTGTTAGGAACTCTGTGGATACCTCTGCTGAAGTTACGGCATTATGGGTCACCCATCGATTGGAAGAGCTAGATTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTTGTCATGCATGGAGATGCCGCCAGCATTAGGAGTTTCATAGAAGCCAGGCAATCCGCCTATATTAACCagattaattcttaa 798 0.4536 MNFPYLTRFPERLVAPLYATVPATTSRSNRAESFAIEGRNLKFSFTTRQTQDVPVLRDCSVRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKINLNHDEVRYRVSKALNAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVITAVRNSVDTSAEVTALWVTHRLEELDYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYINQINS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2559 265 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Ssu1g2559 265 CDD ABC_cobalt_CbiO_domain1 37 238 IPR015856 GO:0005524|GO:0016020|GO:0055085
Ssu1g2559 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 261 IPR003439 GO:0005524
Ssu1g2559 265 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524
Ssu1g2559 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 28 264 - -
Ssu1g2559 265 SMART AAA_5 65 238 IPR003593 -
Ssu1g2559 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 28 264 - -
Ssu1g2559 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 253 IPR027417 -
Ssu1g2559 265 Gene3D - 31 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2559 Ssu-Chr1 70132668 70137191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2559 22 243 Calmodulin-binding Proteins AT2G36910 30.126 1.86e-20 89.0