Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2553 ATGAACGAAGCccaaattgaaattaccattcCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTGCACGGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTGGCCGCAGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCCATCCATCGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGACCATGGTAACTCTGCCACTATTGATTATTTAGCTGCACTAAAGCACACCCTTGAGTCACCCGAATTGGAAAACAAGGTCCAAGCACTTGAGAAAATTAGAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGCTTTCACCAACTGAGTTTCTTGCCCCTACTCTTGGAACTAGTTTTTGGAACTCAGCTCTCGAAGTGTCACATGGAGTTCACGGAGCTGGCACTTTCTTGCATTCTAAAATTGTTGCCTCTATTGAGTTTGGAGCCTCTAAATGTGATCAAAGATGAGTCTAAGTTAGCAACGTTCCTGCTATTATTTGAAAAGGGAACTAGCTCGGTTAAGACTAGTCTTTGCCATCTTATAGATTCAACAGCAGCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCACAAGCTTTTGCATGAGATTGTTGGGCTTGTTCGCCAAGGTTGTGAGGCTTCTAAGGTTGCAATTAAGGCCATGTCAGCATTATGTTCCTTGCAATCTAACAGAGAGAATTTGGTGAGGGCAGGAGCAATTGATGGGGTCATAACATACATTTCAGGTTGTGAAACAAGGCAGAAGAATTTGGCTCCTTTGGCGATGGCAATAATAAAGAAACTTTTGGTGCTGGAGAGTGCTAAAGAGGCTTTGGTGAATCACCCAAGTGGGACTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGGGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCACCAAGACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGATTGAGGAACCAAAACAGGTGTAG 1185 0.4346 MNEAQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFDHGNSATIDYLAALKHTLESPELENKVQALEKIRVLSDEYCSFRKSCFHQLSFLPLLLELVFGTQLSKCHMEFTELALSCILKLLPLLSLEPLNVIKDESKLATFLLLFEKGTSSVKTSLCHLIDSTAAPQTEEVCHMLGHSHKLLHEIVGLVRQGCEASKVAIKAMSALCSLQSNRENLVRAGAIDGVITYISGCETRQKNLAPLAMAIIKKLLVLESAKEALVNHPSGTETLVKMVFRVCNQECSESAVGILSIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2553 394 PANTHER OS02G0542800 PROTEIN 9 386 - -
Ssu1g2553 394 SUPERFAMILY RING/U-box 6 78 - -
Ssu1g2553 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Ssu1g2553 394 CDD RING-Ubox_PUB 14 56 IPR045210 -
Ssu1g2553 394 Gene3D - 86 388 IPR011989 -
Ssu1g2553 394 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Ssu1g2553 394 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Ssu1g2553 394 PANTHER WDSAM1 PROTEIN 9 386 IPR045185 GO:0061630
Ssu1g2553 394 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Ssu1g2553 394 SUPERFAMILY ARM repeat 241 383 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2553 Ssu-Chr1 70055951 70057135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2553 8 387 U-box Gene Family AT3G19380 32.759 8.52e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2553 - - gmx:100815247 686.026