Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2552 ATGGGAGATCAAAACAATAAAACGGATGACTATATAGTATGCTATGCACCTACCATGGTAACAACAAATGGGGTGTGGCAAGGAGACAACCCTTTGAAttattctcttcctcttttcatCTTCCAATTAACTTTAGTTGTTGTTGCCACCCGCATATTCGTCTTCATTCTCAAGCCCTTTCGCCAGCCACGCGTGATTGCTGAAGTCTTGGGTGGAGTAATGTTGGGTCCTTCGGTGCTTGGGCAAAACGAAACATTTGCCAATGCAGTGTTTCCTCTAAGAAGTGTGATGGTGATTGAAACAATGGCAAATATTGGTctcctttattttctcttcttggTAGGGGTGGAGATGGACATAACAGCCATGCGCAGTGTGGGTAGAAAAGCTGTGGCTTCAGCAATTGCTGGCATGGTTTTACCTTTCATCGTTGGAATTGCCTTCTCCTTCCTTTTGGCCAAAAAAACTGACAGTGACATCAACCGAGGCACTTATATCCTATTCCTTGGTGTTGCTCTATCTGTCACCGCATTTCCTGTTCTTGCTAGGATCCTTGCGGAGCTTAAACTCGTTAACACTGAGTTGGGGAGGCTTGCTCTTTCGGCTGCACTCATCAATGATGTGTGTGCTTGGGTTCTTTTAGCTTTAGCCATTGCTTTAGCTGAGACTGAAACCACTACCCTGGCTTCTCTCTGGGTTCTGTTGTCAAGTGCAGCATTTGTGGCCTTTTGTGCTTATGCTGTCAGACCAGCAGCTTCATGGCTAGTTAAGAAGACCCCTGAAGGAGAATCCTTCAGTGAGTTTTATATATCTCTTATTCTAGCTGGGGTCATGGTCTCAGGTTTCATCACTGATGCCATTGGAACTCATTCTGTTTTTGGAGCTTTTGTGTTTGGTTTGGCAATCCCAAATGGACCCCTCAGTTTTACTCTTGTGGAAAAGCTTGAGGACTTTGTATCAGGGCTTCTGCTCCCTCTCTTTTTTGCCATTAGTGGCCTAAAAACTAACCTAGGGCTCATCCAAGGGTCATTCACCTGGATAATTCTTCTTCTAGTCATTTTTCTGGCCTGCATTGGTAAAGTTGTTGGAACCCTATTGGTTGCATTGTTCTATCAAATGCCAATACATGAAGGAGCCGCCCTTGGTTTACTCATGAACACAAAAGGCCTTGTTGAAATGGTCGTGCTTAATGTTGGGAAGGACCAGAAGGTTTTTGATGAAGAAGCATTTGCAGTCATGGTGATTATAACCTTGATAATGACTGGAATTATTGTACCTGTCATATCAGTCATTTACAGGCCATCAAGGAATTCCATATATTACAAAAGAAGAACCATTGAGATATCAAAATCAGATTCTGAGTTCAGAGTCCTAGTTTGTGTCCACACCCCTCGAAATGTGCCAACAATGATCAACCTCCTTGAAGCCTCTAATCCAACAAAGAACTCTCCACTATGTGTCTATGTGCTCCATTTGGTGGAACTTAGTGGTCGTACATCAGCCATGCTCATTGTTCACAACACTGCAAAATCGGATATCCCTGCCCTTAATAGAAGCGAAGCTCAATCTGACCACATAATCAAAGCCTTTGAAAACTATGAGCAACATGCTTCATTCATCTCAGTCCAGCCCTTGACCGCTATCTCCCCTTATTCCACCATGCATGAAGACATATGCAATCTGGCCGCGGACAAACGTGTGTCCCTCATAATTGTTCCTTTTCATAAACAACAAACAGTTGATGGTGGCATGGAAGCTACAAACATGGCATTTAGAGCTATCAACCAGAATGTGCTAGCAAATGCACCTTGCTCAGTGGGTATTCTGGTGGACAGAGGCTTAAGTGGCTCTAACCGTTTGGCTGGAAATCAAGTAACTCATCATGTAGCGGTGTTGTTCTTTGGAGGACCAGATGATAGAGAGGCATTGTGCTATGGATGGAGAATGATGGAACATCCAGGGATTAGCCTTACCATAATGCGTTTTGTCCCAAGTGATCAAGCAGTATCTGACCCAATGAGGCAACAACATGGCATCATTGCGGATGAACCAAGGGTGCTGACAGTGCAGACAGATAGGGATATACAGAAACAGCTTGATGAAAAGCTTATACATGAGTTTAGGGTGACATGTGGGGATAATGATTCAGTTCATTATGTTGAGAAGGTGGTTAGCAATGGGGAGGACACAGTGCAAGCAATAAGGACAATGGATGACATTCATGACCTTTTCATTGTTGGGAGAGGTCAAGGGATGATATCACCACTCACTGCAGGAATCACTGATTGGAGTGAGTGTCCTGAAATAGGGGCAATTGGGGATCTGCTAGCATCTTCAGATTTTGCAGCCACTGCTTCAGTGTTGGTGGTGCAACAATATGTTGGGGAAGGTTCACAATGTGAAGGGCTAGAAACACCAAATGGTGAAGATTATATCACTGACCTTCATTCTACACCACCACCAGGACATAAAGCCTTCAGTTTAGGACGCTAG 2493 0.4336 MGDQNNKTDDYIVCYAPTMVTTNGVWQGDNPLNYSLPLFIFQLTLVVVATRIFVFILKPFRQPRVIAEVLGGVMLGPSVLGQNETFANAVFPLRSVMVIETMANIGLLYFLFLVGVEMDITAMRSVGRKAVASAIAGMVLPFIVGIAFSFLLAKKTDSDINRGTYILFLGVALSVTAFPVLARILAELKLVNTELGRLALSAALINDVCAWVLLALAIALAETETTTLASLWVLLSSAAFVAFCAYAVRPAASWLVKKTPEGESFSEFYISLILAGVMVSGFITDAIGTHSVFGAFVFGLAIPNGPLSFTLVEKLEDFVSGLLLPLFFAISGLKTNLGLIQGSFTWIILLLVIFLACIGKVVGTLLVALFYQMPIHEGAALGLLMNTKGLVEMVVLNVGKDQKVFDEEAFAVMVIITLIMTGIIVPVISVIYRPSRNSIYYKRRTIEISKSDSEFRVLVCVHTPRNVPTMINLLEASNPTKNSPLCVYVLHLVELSGRTSAMLIVHNTAKSDIPALNRSEAQSDHIIKAFENYEQHASFISVQPLTAISPYSTMHEDICNLAADKRVSLIIVPFHKQQTVDGGMEATNMAFRAINQNVLANAPCSVGILVDRGLSGSNRLAGNQVTHHVAVLFFGGPDDREALCYGWRMMEHPGISLTIMRFVPSDQAVSDPMRQQHGIIADEPRVLTVQTDRDIQKQLDEKLIHEFRVTCGDNDSVHYVEKVVSNGEDTVQAIRTMDDIHDLFIVGRGQGMISPLTAGITDWSECPEIGAIGDLLASSDFAATASVLVVQQYVGEGSQCEGLETPNGEDYITDLHSTPPPGHKAFSLGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2552 830 PANTHER CATION/H+ EXCHANGER 3 8 815 - -
Ssu1g2552 830 PANTHER CATION/H + ANTIPORTER 8 815 - -
Ssu1g2552 830 Gene3D - 476 761 - -
Ssu1g2552 830 Gene3D - 38 438 IPR038770 -
Ssu1g2552 830 MobiDBLite consensus disorder prediction 808 830 - -
Ssu1g2552 830 Pfam Sodium/hydrogen exchanger family 45 428 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2552 Ssu-Chr1 70021482 70024540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2552 4 807 Antiporter Super Family AT2G13620 68.944 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2552 - - gmx:100818927 1431