Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2550 ATGGCAGATGGAAGCGTCAACCTTCCTCCTgggttttttttctctccaacaGATGAAGAACTTGTTCTTCACTTTCTCTATTGTAAGGCTTCTCTTACACCATGCCATCCCAACATCATCCCCGAGCTCGATCCGTCTCAGCTTGATCCTTGGGAACTAAATGGTAAGGCGCTATTAAGTGGAAATCAACACTATTTCTTCACCAGAGTGAATGAAAACAGAACAGCAGAAAATGGGTATTGGAAGGAAATAGGTGTCACAGAACCTATATTGTCAACCGTCGACAGGAAAGTGGGAATGAAGAAGAACTTGGTGTTCCACATTGGCGAAGCTCCACAGGGCACGGAAACCAATTGGGTAATGCAAGAATATCATATATGTTCCTCTGGGTTTGACACTGCCTCGTATCGAAGTGCTAGGAGGAGACGAAAACATGATCAGAGTTGGAGCAAGTGGGTTTTGTGCAGAGTCTGTGAAAAGGGCAGGTCTCAACAAGGTGTAAGCTGCTATAGCGATAACGATGACAATGGATCAGAGCTTTCATGGCTAGACGAAGTTTTTCTGTCGTTGGATGATGACCTGGACGAAATTGGCATGCTTAATTAG 606 0.4323 MADGSVNLPPGFFFSPTDEELVLHFLYCKASLTPCHPNIIPELDPSQLDPWELNGKALLSGNQHYFFTRVNENRTAENGYWKEIGVTEPILSTVDRKVGMKKNLVFHIGEAPQGTETNWVMQEYHICSSGFDTASYRSARRRRKHDQSWSKWVLCRVCEKGRSQQGVSCYSDNDDNGSELSWLDEVFLSLDDDLDEIGMLN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2550 201 PANTHER NAC TRANSCRIPTION FACTOR 56 2 198 - -
Ssu1g2550 201 Pfam No apical meristem (NAM) protein 9 126 IPR003441 GO:0003677|GO:0006355
Ssu1g2550 201 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Ssu1g2550 201 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Ssu1g2550 201 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Ssu1g2550 201 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2550 Ssu-Chr1 69990907 69991745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2550 1 165 NAC Transcription Factor Family AT1G61110 41.379 1.21e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2550 NAM 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2550 - - gmx:100170711 376.326