Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2549 ATGAAGAAACAAGGGTGTGAGGTTGAGGCAATAGGCATCAACTACAAGGTCGTCCGCACAAAGACAACAAAGCAACCTTTTAAAATCTTCAGCAGACCTCCACAGCTGAATAGGGAAGAAGATGTTGATGAACCAGAAGATGAAGCAAAAGCTGAACAAAGATCATGCAGTGGGGTTAGGCATGCCCTCAAGGATGTGAACTGCGTAGCCAAGCCATGGGAAATTCTGGCAATTGTTGGGCCAAGTGGGGCTGGAAAATCATCCCTGCTTGAGATTCTTGCTGGTAAAGCTAATCCACAAAGTGGGTCTATTTTGGTGAATCATGAACCTGTGGATAAAGCTCAGTTCAAAAAATTTTCAGGGTATGTTACACAAAAGGATACCTTGTTTCCCTTACTTACAGTTGAAGAAACCATTATGTTTAGTGCAAAGTTAAGGTTAAATCTTCCTCAAGAGCAACTATGCTCCAGGGTCAAGTCACTGATTCTAGAGCTTGGTCTTAGCCATGTTGCTAGGACTAGGATTGGAGATGACGGGGTCCGCGGCATATCTGGTGGTGAGAAGCGCCGAGTTTCCATTGGTGTTGAAGCCATACATGATCCAAAAGTGCTGATTTTGGATGAACCAACTTCAGGGCTTGACAGTACCTCAGCTTTGCAAATAATTGATATGCTTAAAGTCATGGCTGACTCTAGGGGACGAACTATAATCCTAAGTATCCATCAACCCGGGTACAGAATAGTGAAGCTGTTCAACTCAATACTGTTATTGGCCAATGGCAATGTGTTACACCATGGCACTGTGGATTTGCTGGGTGTGAATCTAAGCCTAATGGGTTTAGAGCTTCCTCTTCGTATTAATGTAGTTGAGTTTGCCATTGATTCCATTGAGACCATTcagcaacaacaaaaatatcaGCAGGTTCAGCTAGAAGCACCACTGCGATTGACAATGCAGCAAAAGAGAGGTGATGATCAAGGTGAGAGTAGAAGTGGTAAGTTTACTTTGCAACAGATCTTTCAACAATCCAAGGTAATTGATGTAGAAATCATTAGAGCAGGAATGGATATCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCCTTCGTACAAAGGAACTCTTTGCATGTAGGACAATTCAGATGCTGGTTTCTGGGCTGGTTTTGGGCTCTGTCTTTTGTAATCTCCAGGATGGTCTAgtgggagaagaagaaagagtggGTCTATTTGCTTTCATATTAACGTTTTTGTTATCAAGCACCACTGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTTTAATGAAGGAGACCTCTAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTCGCCATTTCTACTCATACTAGCCATTTTATTCACAATGCCTCTGTACTGGCTTATCGGTCTCAACAGGAATTTCACGGCGTTATTGTACTTTTTGGTGCTTATTTGGCTAATTCTTTACACCGCAAATTCGGTGGTGGTATGCTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGGAATTCAATGATCGCTGGTGTCATCGGTTCGTTTCTCTTGTTCTCTGGCTACTTCATATCAAAACATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCTCCATTTAAGTATCCCTTTGAAGGGTTCCTAATAAATGAGTTCTCCAACTCAAATAAGTGCTTGGAGTACTTGTTTGGGGGATGTGTGGTGAGAGGAGAGGATGTACTTAGAGAAGCAGAGCTTGGAGGGGAGACTAGTAGATGGAGGAATGTTGGGGTGATGGTGTGCTTCATCTTGGTTTACAGGTTCATTTCTTATGCAATTCTAAGGTACAGATGCTCGCAAGGCGTCATCCTAGGAGTATga 1935 0.4109 MKKQGCEVEAIGINYKVVRTKTTKQPFKIFSRPPQLNREEDVDEPEDEAKAEQRSCSGVRHALKDVNCVAKPWEILAIVGPSGAGKSSLLEILAGKANPQSGSILVNHEPVDKAQFKKFSGYVTQKDTLFPLLTVEETIMFSAKLRLNLPQEQLCSRVKSLILELGLSHVARTRIGDDGVRGISGGEKRRVSIGVEAIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADSRGRTIILSIHQPGYRIVKLFNSILLLANGNVLHHGTVDLLGVNLSLMGLELPLRINVVEFAIDSIETIQQQQKYQQVQLEAPLRLTMQQKRGDDQGESRSGKFTLQQIFQQSKVIDVEIIRAGMDITCDFANSRLRETMILTHRFSKNILRTKELFACRTIQMLVSGLVLGSVFCNLQDGLVGEEERVGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYSPFLLILAILFTMPLYWLIGLNRNFTALLYFLVLIWLILYTANSVVVCFSALVPNFIVGNSMIAGVIGSFLLFSGYFISKHEIPNYWIFMHYISPFKYPFEGFLINEFSNSNKCLEYLFGGCVVRGEDVLREAELGGETSRWRNVGVMVCFILVYRFISYAILRYRCSQGVILGV 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2549 644 Pfam ABC transporter 63 211 IPR003439 GO:0005524
Ssu1g2549 644 MobiDBLite consensus disorder prediction 32 53 - -
Ssu1g2549 644 ProSitePatterns ABC transporters family signature. 183 197 IPR017871 GO:0005524
Ssu1g2549 644 Gene3D - 50 325 IPR027417 -
Ssu1g2549 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 284 IPR003439 GO:0005524
Ssu1g2549 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 635 - -
Ssu1g2549 644 SMART AAA_5 72 261 IPR003593 -
Ssu1g2549 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 635 - -
Ssu1g2549 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 270 IPR027417 -
Ssu1g2549 644 Pfam ABC-2 type transporter 369 577 IPR013525 GO:0016020|GO:0140359
Ssu1g2549 644 Pfam ABC-2 type transporter 241 318 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2549 Ssu-Chr1 69948795 69950729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2549 68 271 Calmodulin-binding Proteins AT2G36910 26.794 1.25e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2549 K05681 - gmx:121172640 1112.44