Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2542 ATGGAAGATGAAAGCCATAGCAATTTGCCAAATGGGTTCACCACAGGAAGTCCCGAAAGTCCTTGCTTAAAGACATGCAACAACACCACCCCCACTGCCCACAACAACAAAGAACAAGATCGCTTTCTTCCTATAGCCAACGTGGGAAGAATCATGAAAAAAGCGATCCCTGGCAATGGGAAAATCTCAAAGGATGCAAAGGAGACAGTCCAAGAATGTGTCTCCGAATTCATCAGCTTTGTCACAGGAGAAGCCTCTGACAAGTGTCaaagagaaaagaggaagaCCATCAATGGGGATGACATCATTTGGGCCATTACCACCTTAGGATTTGAGGATTACGTGGACCCATTAAAATCCTATCTCCAGAAATATAAAGAGATAGAAGGAGAGAAGCTTAACATTCCTAAGCAACAACGTTCTGAACAAAGGCTACATCAACAACAGCAACACCCCCACCAAgaccaaaataataatctaCCTTTAAGTAGTGTATATTCCTCACCAAACCTCATTTCTCAGCCTCCGTATGTAGCCACGGATCAGCTTTTTTCCCTACCATTCTCCCCAAATTCAATTCAGAAACAGTTACAGCCGCAAGACCAGATCGATTCGGTGGGGCAATGGTAA 630 0.4206 MEDESHSNLPNGFTTGSPESPCLKTCNNTTPTAHNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGEKLNIPKQQRSEQRLHQQQQHPHQDQNNNLPLSSVYSSPNLISQPPYVATDQLFSLPFSPNSIQKQLQPQDQIDSVGQW 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2542 209 MobiDBLite consensus disorder prediction 7 36 - -
Ssu1g2542 209 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Ssu1g2542 209 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Ssu1g2542 209 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Ssu1g2542 209 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g2542 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 199 - -
Ssu1g2542 209 SUPERFAMILY Histone-fold 39 154 IPR009072 GO:0046982
Ssu1g2542 209 Gene3D Histone, subunit A 30 162 IPR009072 GO:0046982
Ssu1g2542 209 MobiDBLite consensus disorder prediction 138 168 - -
Ssu1g2542 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Ssu1g2542 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 199 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu1g2542 209 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu1g2542 209 MobiDBLite consensus disorder prediction 150 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2542 Ssu-Chr1 69898218 69898847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2542 12 209 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.722 2.61e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu1g2542 CBFD_NFYB_HMF 6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2542 K08065 - gmx:100778216 317.775