Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2539 ATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTATTAAAGCTGCAAAAGGTGCGAAGGCATATGAAAGATCGGAGGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCTCAATACTatcttgagaatcaaattaGCAAGCCAATTCTGAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGTCATACAAgatctatttctatttctactCCGTCAAACAGTGGCATATTGAAATTTGCTAAGAAACAGCTTACCTGCATTGGTTGTAAAGCTTTACTTAgCAGTGGTCATCACACGCTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTGTACTGTAAAACAGTAGCTCAAGTGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACGCAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAGAAAGATATGGCCGAAGCAAAGTTGCAATTGGACCGGTGGAGCTTCTAA 585 0.4051 MRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGILKFAKKQLTCIGCKALLSSGHHTLCSHCKGREAELYCKTVAQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWSF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2539 194 Gene3D - 1 77 IPR042087 -
Ssu1g2539 194 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 1 193 - -
Ssu1g2539 194 Pfam DNA polymerase family B 2 67 IPR006134 GO:0000166|GO:0003677
Ssu1g2539 194 SUPERFAMILY DNA/RNA polymerases 6 70 IPR043502 -
Ssu1g2539 194 Pfam C4-type zinc-finger of DNA polymerase delta 104 175 IPR025687 -
Ssu1g2539 194 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2539 1 194 Core DNA Replication Machinery Family AT5G63960 87.113 2.97e-120 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2539 K02327 - gmx:100817379 387.111