Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2538 ATGAGCAACAACGCCTCCCGGAAGCGCCCGGCGGCGCCGTCGCAACCGCCGCCGGCGAAGCAGGCCATAATGAGCCAGGAAGAAGAGTTCATGGACGAAGACGTGTTCCTGGACGAAACCCTCGTTTCCGAGGACGAAGAGTCCCTCATTCTCCGCGACATCGAGGAGCGCCAGGCCCTCGCCACGCGCCTCTCCAAGTGGACCCGTCCTCCTCTCTCCTCCGACTACGTCTCCCAATCTCGTAGCGTCGTGTTTCAGCAGCTGGAGATTGATTACGTGATTGGAGAGAGCCACAAGGAGTTGCTGCCAAACTCGTCTGGACCTGCTGCCATTATCAGAATATTTGGAGTTACCAAGGAAGgACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCtcccattttcatcaagctctTGAGGGAAGGATGAGAGAGGCCAATAGAAACAGTAATGTGGGAAAATTCGTTCGCCGTATTGAAATGCTGCAGAGAAGGAGCATTATGTACTATCAGCAATCCAATTCCCAACCATTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAGACAGCAAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTTCGAATTGATTAGTCATGCTCCCGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATCGAGTGTGCTGGCCGTAAAGGTCATTTTCCCGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCAATCGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAGGTCCTGCTAGCTTGGAGGgATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGaGAGCTGCGAACCTGAAGATAGCAGAATTTCCAATTCTGGGCCGTATGAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCGTCAAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTAGATTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTGAATTCTGTGTCGGCACACTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCCGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCCCAACGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCATTTCTACTTTCCAGAGGCCAAAGCATCAAGGTACTTTCTCAACTTCTTAGGAAGGCAAGGCAGAAGAATCTGGTCATTCCTAATGTCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTCGCATCCTTGTATCCATCTATCATGATGGcctataatttatgttattgCACGCTGGTGACCCATGAAGATGCTCGCAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCTGGTGAAAcatttgttaaatcaaatttgcAGAAAGGAATACTTCCTGAAATACTTGAAGAGCTATTAGCAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAAGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCTGTGTATGGGTTTACGGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCAAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACGACAAAACTTGTGGAAGATAAATTTACGACACTTAATGGCTATGAACACAATGCTGAGGTAATATACGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGTTGTGGATGAGGCTATGAACCTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTTAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGATTTATCACTTCTGGTTATTACAAAGGGTTTAACGAAGACAGGAGATGATTATGAAGTGAAGGCATGCTCATGTTGA 2661 0.4254 MSNNASRKRPAAPSQPPPAKQAIMSQEEEFMDEDVFLDETLVSEDEESLILRDIEERQALATRLSKWTRPPLSSDYVSQSRSVVFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQALEGRMREANRNSNVGKFVRRIEMLQRRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKSLSYCQLEFDCLYFELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRMRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQLDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTHEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTTKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSVVDEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKACSC 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2538 886 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g2538 886 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 883 - -
Ssu1g2538 886 Gene3D DNA Polymerase, chain B, domain 1 88 264 - -
Ssu1g2538 886 Pfam DNA polymerase family B 525 883 IPR006134 GO:0000166|GO:0003677
Ssu1g2538 886 SUPERFAMILY Ribonuclease H-like 109 531 IPR012337 -
Ssu1g2538 886 CDD DNA_polB_delta_exo 288 517 - -
Ssu1g2538 886 Gene3D - 293 511 IPR036397 GO:0003676
Ssu1g2538 886 ProSitePatterns DNA polymerase family B signature. 739 747 IPR017964 GO:0000166|GO:0003676
Ssu1g2538 886 SMART polmehr3 292 751 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu1g2538 886 Gene3D - 793 886 IPR042087 -
Ssu1g2538 886 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 883 - -
Ssu1g2538 886 TIGRFAM pol2: DNA polymerase (pol2) 347 884 - -
Ssu1g2538 886 Gene3D Helix hairpin bin 640 692 - -
Ssu1g2538 886 Gene3D Palm domain of DNA polymerase 567 792 IPR023211 -
Ssu1g2538 886 PRINTS DNA-directed DNA-polymerase family B signature 737 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu1g2538 886 PRINTS DNA-directed DNA-polymerase family B signature 584 597 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu1g2538 886 PRINTS DNA-directed DNA-polymerase family B signature 676 688 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu1g2538 886 SUPERFAMILY DNA/RNA polymerases 550 880 IPR043502 -
Ssu1g2538 886 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2538 Ssu-Chr1 69812478 69823670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2538 5 883 Core DNA Replication Machinery Family AT5G63960 80.868 0.0 1507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2538 K02327 - gmx:100817379 1664.05