Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2536 ATGAAGTTAATCGGCGACGGAGCCGGTGGCCGGAAGGTCCTGGTCGGCGTGAAATTAGATCCTCGCAGCAGGGAATTGCTGACGTGGGCGCTCGTCAAGGTGGCCGAGCCCGGCGACCTCGTCATTGCGCTTCACGTTCTCGACACCATCACTGaGGGAACGGCATCGCTGTTATCTCTGGTGAAGACTTTCGATTCCGTTCTCGCCGTTTACGAAGGCTTCTGCAACCTAAAACAGgttgGTCTGAGGCTTAAAATGTGTCGCGGCGGTTCGGTGCGGAAGGTTCTGGTGCAGGAGGCGAATGCGTTTGGCGTTTCCACCGTGATTTTGGGAACTTCTAAATCTCACCACACTATTCGTTCTTCCGCGTGGGTTGCGAAATACTGCGCGAAGAAATTGCCAAAGTGTGTTTCCGTTTTCGCTGTTGATAACGGCAAAATCGCGTTCCACAGAGAAGCTGCTGGATTGTGTAGTGACCGAGAAAAATTACGTGAGGGGTCAAGTTTGTCGTCCAAATCGTTGGtggtttatacaaataaaagtgTGAAGAGTTGTGGAAGTTGTGCATTGCGAGAGAGTTGTGGAACTGAGTTTGAGCAGGGGTtgtgtgatggtgttgagaagGAGAATTCACTTGCTTTGGTTCCGTTTAAAAAGCTTGATGATGGCGATGCTCCTTGTTATTCGGTTGTGGTGGGTAATTCGAAGCATAAACCTGGCTGGTCACTGCTTCGCCATGTATTTCATCCCAAAAGGCATGCCAATAAGTCTTCtctgaaaaataatacatttgtttttcAACGGGCGTTGCGACAGCCGAACTTTCATTCTTCGGCTGTGGTCCATCCGGATCATAAACAAATTAGTATTGAGCAGATTGATGAGTCCCCCTTGGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTGCTACCTCCCTTTGCAGTGACTTGAGTAGCCTGCCTGAAGAATTGGTGGTATTACAAGAGAAGTACTCATCTTCGTGCCGGTTGTATAGTTTGCAGGAACTTGTATCTGCAACCTCCAACTTCGCACCTGAAAATTTGGTTGGCAAAGGTGGTTGTAGTTATGTTTACAGAGGATGTCTTCTGGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCTGAAAATGTGCTGAAGGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGAGTCACAAGAACATAATATCTATATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACtagtttatgattttttatcaaGGGGGAGCCTAGAAGAAAACCTTCACGGCAACAAGACAGACTCTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCCGTGGGTGTAGCCGAGGCCTTGGATTATCTGCATAATGGCTGTGCTCAACCTGTGATCCATAGGGATGTGAAATCTTCGAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATATTACTTGTACTGATGTGGCCGGAACTTTTGGATACCTCGCACCTGAGTACTTTATGCACGGTAGAGTGACTGATAAAATTGACGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCAATTAACAATGAACGTCCAAAGGGCCAGGAGAGCCTTCTTATGTggGCAACACCAATTTTGGAAGGTGGGAAGTTTTCCCAGTTGCTTGATCCAGGCCTAGGCAGTGACTACGACGATTGCCAGATAAAGAGAATGATTTGGGCCGCTACTCTCTGCATTAGACGGGTACCTAGATTGCGACCTCAAATCAGCTTTGTAAGTCTTTTGCCTGGGCTAATGTGCTCCATTCCATTTGTCCTTCCCTTTATGTCTGTCCTTTTGAATATCAGTCATGTTTTTTCATTGATGCAGATATTGAAACTTCTGCATGGTGATGAAGAGGTGACAAGATGGGCAGAGCAAGAAGTTAATGCACCACAGGAACTTGATGGATTTGATGAGGAACCAATTCCAACTAATAATATTCAGTCCCACCTGAACCTTGCTTTGCTGGACTTGGAGGATGATACGGTTTCTATTAGTAGCACTGAGCAGAGTGTCTCGTTGGAGGACTATTTGCAGGGAAGATGGAGTCGCTCTTCAAGTTTTGACTAA 2187 0.4458 MKLIGDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKMCRGGSVRKVLVQEANAFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCVSVFAVDNGKIAFHREAAGLCSDREKLREGSSLSSKSLVVYTNKSVKSCGSCALRESCGTEFEQGLCDGVEKENSLALVPFKKLDDGDAPCYSVVVGNSKHKPGWSLLRHVFHPKRHANKSSLKNNTFVFQRALRQPNFHSSAVVHPDHKQISIEQIDESPLDGVSGAIVPFGSATSLCSDLSSLPEELVVLQEKYSSSCRLYSLQELVSATSNFAPENLVGKGGCSYVYRGCLLDGKELAVKILKPSENVLKEFVQEIEIITTLSHKNIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKTDSSAFGWQERYKVAVGVAEALDYLHNGCAQPVIHRDVKSSNILLSDDFEPQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNERPKGQESLLMWATPILEGGKFSQLLDPGLGSDYDDCQIKRMIWAATLCIRRVPRLRPQISFVSLLPGLMCSIPFVLPFMSVLLNISHVFSLMQILKLLHGDEEVTRWAEQEVNAPQELDGFDEEPIPTNNIQSHLNLALLDLEDDTVSISSTEQSVSLEDYLQGRWSRSSSFD 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2536 728 PANTHER OS01G0253100 PROTEIN 647 722 IPR045271 GO:0004714|GO:0006468
Ssu1g2536 728 CDD USP_Like 12 137 - -
Ssu1g2536 728 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 619 - -
Ssu1g2536 728 ProSiteProfiles Protein kinase domain profile. 351 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2536 728 Gene3D HUPs 2 142 IPR014729 -
Ssu1g2536 728 Gene3D Transferase(Phosphotransferase) domain 1 426 620 - -
Ssu1g2536 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Ssu1g2536 728 Pfam Protein kinase domain 354 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2536 728 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 647 722 - -
Ssu1g2536 728 SUPERFAMILY Protein kinase-like (PK-like) 331 617 IPR011009 -
Ssu1g2536 728 Pfam Universal stress protein family 11 137 IPR006016 -
Ssu1g2536 728 PANTHER OS01G0253100 PROTEIN 7 619 IPR045271 GO:0004714|GO:0006468
Ssu1g2536 728 SMART serkin_6 351 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2536 728 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 116 - -
Ssu1g2536 728 Gene3D Phosphorylase Kinase; domain 1 318 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2536 Ssu-Chr1 69750183 69753198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2536 334 638 Trihelix Transcription Factor Family AT1G68690 44.051 1.74e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu1g2536 Pkinase 5.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2536 - - gmx:100815722 1232.62