Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2515 ATGGATTTGGCCTCCACCTCTGCAAACGCACGTGTCGAAATTCACTCTGTTTCTTTTATCCTTTCACGCTATAAAACCCACCCAGTGTGTCCTCTCTCACACGTTTCAAGTCGCAGAGCCAACAACAATTCCCTCACCACCAACATCAACGACAACagcaacaaaaagaagaagcttgCAAATCAGAAGGTTTCAGTTAAAGGGAGAACACAACAGAGAGAAGAGGAAACGCGAATGAAGGGTGAATTAGAATTGCCACCTGGGTTCAGATTTCACCCCACCGACGAGGAATTGGTGAATCACTACTTGTGTAGGAAATGCGCTGGCCAACCAATCGCGGTTCCCGTCATCAAAGAGGTCGATTTGTACAAGTTTGACCCGTGGCAGCTTCCAGAAATCGGCTTTTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGACCGGAAATATCCGAACGGTTCACGGCCGAACCGGGCCGCCGGAAGCGGGTACTGGAAAGCCACCGGAGCCGATAAACCGATCGGAAAACCCAAAGCGCTTGGGATCAAGAAAGCACTCGTGTTCTACGCGGGGAAAGCCCCCAAAGGAGTCAAGACCAATTGGATCATGCACGAATATCGTCTCGCCAATGTTGACCGATCCGCCTCcaagaaaaataacaacttgAGGCTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGCCGCACCGAAAATGAATCTTGGGGTGGTTCATAATTTTGACCACGAGAACGAGACCAAGCCGGAGATTCACAAGCTTGGGAGTGAGCAGTTGCACATGGACACCTCTGATTCGGTGCCTAGGTTACACACGGACTCGAGCTGCTCGGAGCACGTGGTTTCGCCTGATGTCACGTGGGATAGGGAGGTGCAGAGCGACCCCAAGTGGAATGATTTGGATCTACAATTTGACAACGCGTTTGATTTTCAGTTTAATTACTTGGACAATAACCTGTCCGTGGATGACCCTTTCGGCACTCAGGTTCAGTACCAAATGGGCCAGCTCTCCCCCTTGCAGGACATGTTCATGTACCTAAAGAAGCCGTTTTGA 1104 0.481 MDLASTSANARVEIHSVSFILSRYKTHPVCPLSHVSSRRANNNSLTTNINDNSNKKKKLANQKVSVKGRTQQREEETRMKGELELPPGFRFHPTDEELVNHYLCRKCAGQPIAVPVIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTAAPKMNLGVVHNFDHENETKPEIHKLGSEQLHMDTSDSVPRLHTDSSCSEHVVSPDVTWDREVQSDPKWNDLDLQFDNAFDFQFNYLDNNLSVDDPFGTQVQYQMGQLSPLQDMFMYLKKPF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2515 367 ProSiteProfiles NAC domain profile. 85 236 IPR003441 GO:0003677|GO:0006355
Ssu1g2515 367 SUPERFAMILY NAC domain 79 236 IPR036093 GO:0003677|GO:0006355
Ssu1g2515 367 Gene3D NAC domain 94 241 IPR036093 GO:0003677|GO:0006355
Ssu1g2515 367 MobiDBLite consensus disorder prediction 42 86 - -
Ssu1g2515 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 83 341 - -
Ssu1g2515 367 MobiDBLite consensus disorder prediction 68 86 - -
Ssu1g2515 367 Pfam No apical meristem (NAM) protein 86 209 IPR003441 GO:0003677|GO:0006355
Ssu1g2515 367 PANTHER NAC TRANSCRIPTION FACTOR 56 83 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2515 Ssu-Chr1 69365957 69367451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2515 79 367 NAC Transcription Factor Family AT1G01720 64.784 1.08e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2515 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2515 - - gmx:100814504 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2515 1 69365957 69367451 Ssu1g2515 1 69365957 69367451 ECH