Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2511 ATGGGAGACGGCAGTGGCAGCAACCGGTCAAACAGCAACAAGCCGGAGTGGCTGCAGCAGTATGATCTGATTGGGAAGATTGGGGAAGGCACCTACGGCCTCGTCTTCCTCGCTCGCATCAAGTCTCCCACCAATCGCGGAAAATCCATCGCCATCAAAAAATTCAAGCAATCTAAGGACGGCGACGGTGTCTCTCCCACCGCCATCCGTGAAATcatgTTACTCAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTCTATCTTGCTTTTGATTATGCGGAACACGACCTCTATGAAATAATAAGATATCATAGGGACAAGGTCAACCAATCCATTAACCAGTATACTATTAAATCATTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATCATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGCGGAGGAACATGGAGTTATTAAAATTGCTGACTTTGGACTTGCGAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTCACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACACTATACCAGTGCTGTTGATATGTGGGCCGTGGGATGCATTTTTGCTGAGTTGTTGACCTTAAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACGCCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATACACAACATATACAAGGACACAAATATGACAACACTAGTCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAGTATGATCCACGAAAGCGCATAACAGCAGCGCAGGCTTTGGAGCATGAGtatttcaaaattgaaccaCAACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAAATATCCCACGCGTCCAGTGGATTCAACAACAGATTTTGAAGGGACAACCAACATGCAACCTTCACAGCCGGTTTCGTCGGGAGCTGCAGTTTCTGGCAGTATGCCTGGTGGTCATGTATTGAATAGATCTGTCCCTCGGCCAATAAATGTTGTTGGCATGCAGAGAATACCTCATCAGGCAATGCAAGCTTATAATCTCACATCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCCTCCCAATGCAACGAGGTGTTCCACAGCAACAGTTGAGAAGAAAAGACCAAATGGGGATGCCAGGATACCCTCCACAGCAGAAATCAAGACGTATATAA 1398 0.4478 MGDGSGSNRSNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRYHRDKVNQSINQYTIKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEAEEHGVIKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDTQHIQGHKYDNTSLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRNALVPCQPGETFVKYPTRPVDSTTDFEGTTNMQPSQPVSSGAAVSGSMPGGHVLNRSVPRPINVVGMQRIPHQAMQAYNLTSQAGMGGGMNPGGLPMQRGVPQQQLRRKDQMGMPGYPPQQKSRRI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2511 465 SUPERFAMILY Protein kinase-like (PK-like) 16 332 IPR011009 -
Ssu1g2511 465 SMART serkin_6 21 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2511 465 CDD STKc_CDK8_like 20 331 - -
Ssu1g2511 465 ProSiteProfiles Protein kinase domain profile. 21 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2511 465 MobiDBLite consensus disorder prediction 365 382 - -
Ssu1g2511 465 PANTHER CELL DIVISION PROTEIN KINASE 10 464 - -
Ssu1g2511 465 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Ssu1g2511 465 Pfam Protein kinase domain 21 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2511 465 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Ssu1g2511 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Ssu1g2511 465 MobiDBLite consensus disorder prediction 421 465 - -
Ssu1g2511 465 Gene3D Transferase(Phosphotransferase) domain 1 106 345 - -
Ssu1g2511 465 MobiDBLite consensus disorder prediction 365 396 - -
Ssu1g2511 465 PANTHER CYCLIN-DEPENDENT KINASE E-1 10 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2511 Ssu-Chr1 69343964 69351652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2511 1 465 Core Cell Cycle Gene Families AT5G63610 74.423 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Ssu1g2511 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2511 K02208 - gmx:100813433 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2511 1 69343964 69351652 Ssu1g2511 1 69343964 69351652 ECH