Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2508 ATGGCCGATTTTCTGACCTCTACCCACCGAGCGAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATACAGAGCAGCTAATCAGAGAGCCAAACAAATTATAGAGAAGtgtggaGCAACTCTAATGGAAGTAGGTGTTGATGGGTCGTTGTCATATCCTGAACCCCGGATGGCTGCACAGGACAGTGCTGAAAAGCATTCTCGGACAAAACCTCTTAGTATTGAGGAAGAACAATGTACAAGGGTATTTTATGAAAACAAGGTACGAGAAGTATGTGAAAACTTATGTGAAAGCTTCCGCTTACCCAGGAAGATCCAGGCAACAgcccttatcttttttaaaagattctaTCTGCAATGGTCGGTGATGGAACATCAACCAAAATATATAACGTTGGCCTGCATATATGCTGCATGTAAGATAGAAGAAAGTTATGTGTCAGCTGAGGAGCTTAGTAAGGGGATTTTACAGGATCATCAAATGATTCTCAATTATGAGATGATTGTTTATCAGAGTTTGGAATTTGATCTTATTGTTTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTGCAACTGCAATGCTGGTGATGATCAGCTTAAAATGCTCAAGACTTTGCAAGAAACAACAAGATCGGAAGTTGATAAAATGATGCTTACAGATGCACCGCTTTTATTTCCTCCTGGGCAGTTGGCCTTGGTTGCTTTGCGCAACTCAAATGCACTCCATGAAGTCATTGACTTTGATAGTTATCTTAGGAGCATTTTTTCCCATCAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGAATGCAATTGATTCTTGGATGCAGATTACAAAATATGAGTGTCCTTCTAGGAAGGTATTGAGGCATATCGAGCGAAAACTGACGTCTTGTTGGGGTCTTAGCTCTCATGAGGAGGGCAAGAAGCGGGAGAAGAAAACAAAGCACAAGTCCAAACACAGCTCAAATGAAGCACAAAATTATCCGAAGTGTGGGTGTACTCTTGAGAATGACAATATAACTTCTGATCACGAGAACATTGAAAGAGTAGtaAACATTGCGATATATTGGTCCACTTAA 1113 0.3953 MADFLTSTHRAKWIFSPQQLVEKYRAANQRAKQIIEKCGATLMEVGVDGSLSYPEPRMAAQDSAEKHSRTKPLSIEEEQCTRVFYENKVREVCENLCESFRLPRKIQATALIFFKRFYLQWSVMEHQPKYITLACIYAACKIEESYVSAEELSKGILQDHQMILNYEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFCNCNAGDDQLKMLKTLQETTRSEVDKMMLTDAPLLFPPGQLALVALRNSNALHEVIDFDSYLRSIFSHQNSMHTMSELSESLNAIDSWMQITKYECPSRKVLRHIERKLTSCWGLSSHEEGKKREKKTKHKSKHSSNEAQNYPKCGCTLENDNITSDHENIERVVNIAIYWST 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2508 370 Pfam Cyclin C-terminal domain 183 282 IPR031658 -
Ssu1g2508 370 PANTHER CYCLIN-H 1 339 - -
Ssu1g2508 370 SUPERFAMILY Cyclin-like 183 312 IPR036915 -
Ssu1g2508 370 CDD CYCLIN 96 171 IPR013763 -
Ssu1g2508 370 Gene3D - 63 179 - -
Ssu1g2508 370 SUPERFAMILY Cyclin-like 6 180 IPR036915 -
Ssu1g2508 370 Pfam Cyclin, N-terminal domain 94 178 IPR006671 -
Ssu1g2508 370 PANTHER CYCLIN 1 339 IPR043198 GO:0006357|GO:0016538
Ssu1g2508 370 Gene3D - 181 288 - -
Ssu1g2508 370 MobiDBLite consensus disorder prediction 317 336 - -
Ssu1g2508 370 SMART cyclin_7 87 172 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2508 Ssu-Chr1 69265263 69270256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2508 1 283 Core Cell Cycle Gene Families AT5G27620 61.131 1.79e-123 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2508 K06634 - gmx:100800023 539.265