Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2500 ATGCAGGAGGACAACAAGAAGATGAAGGTGAAGAAAGGATTTCTCGCTGTTCAAGTGGGTTTAGAGGACGACGACGAAGGTGGCTCTTCCTCTCAGAGATTCGTCATCCCCATCTCCTACCTTTACCACCCTCTCTTCAAGCGCCTTCTCGACAAGGCTCGCGAGGTGTATGGCTACCACACCGATGGCCCCCTCAAGCTCCCGTGCTCCGTCGACGATTTTCTCCATCTCCGTTGGCGAATCGAGAAGGAGTCCACTCccgaccaccaccaccaccaccacacccACCATCGCCTTCCCCACGCTCTGCACTTCCACTCTTGTTAA 327 0.4954 MQEDNKKMKVKKGFLAVQVGLEDDDEGGSSSQRFVIPISYLYHPLFKRLLDKAREVYGYHTDGPLKLPCSVDDFLHLRWRIEKESTPDHHHHHHTHHRLPHALHFHSC 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2500 108 PANTHER SMALL AUXIN-UP RNA-RELATED 8 97 - -
Ssu1g2500 108 Pfam Auxin responsive protein 6 80 IPR003676 GO:0009733
Ssu1g2500 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 8 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2500 Ssu-Chr1 69047976 69048302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2500 10 82 Calmodulin-binding Proteins AT3G43120 46.575 1.03e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2500 K14488 - gmx:100809305 199.904