Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2492 ATGGCCACAGAAATTTGTGGCGCGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACTGCAACAGCGGCACCAGCAAAACGTGTTATTCCATGCTCAACGAAGCAGAACAAGAAGAAGCACTACCAGATTCCACTCATCCAAACGCTGCTTTTGTTCTGGCTTTCCAAATGCCTCCACGTTTCGCCGCGGCGTCGTGTGCCAGGTGGCGAGCACCAACTTCGAATCCGCCGCCAAAGCCGGCGAGGATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCACATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCACCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGAtttggagagagaaagaggcaTCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCCGGGCATGTTGACTTCTCGTATGAGGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCGGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGACTGTAGCAATGCTATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGATAgCTACTATGATCCATATAGAGGTGTTATTGTATACTTTAGAGTTGTAGATGGAACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAGTCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGTTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGCAGAAGGGCTGATAATTCACTCCCTGGATACGAGGAAGCCACTCCCATGGTGTTCTGTGGCCTGTTTCCTGTTGATGCCGACCAATTCCCTGATTTGCGTGATGCTCTTGAGAAGCTACAACTCAATGATGCTGCACTGAAGTTTGAACCTGAGACCTCGAGTGCCATGGGATTTGGCTTTAGGTGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAATTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCAGAGCctggaaaaagaaaatcaattgaGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATCGCTGAAAATAGGGCATCAATCACCTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGATCAGTTAAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACCTTTTTCGGgtacaaagaaaataatttaattaaacttgaCATACGGATAAATGGTGATTGTGTGGAGCCATTGGCTACAATTGTGCACAATGATAAGGCATATTCTGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCACGGCAAATGTTTAAAGTACCAATTCAAGCGTGCATAGGATCAAAAGTGATTGCTAGTGAAGCGATATCTGCAATAAGGAAGGATGTACTAGCCAAATGCTACGGTGGGGAcatttcaagaaaaaagaaattgctTAAGAAACAGgctgaaggaaagaaaaggatgAAGTCTATTGGTAAAGTTGATGTGCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 2067 0.4064 MATEICGASLFLSVKTQLQLQQRHQQNVLFHAQRSRTRRSTTRFHSSKRCFCSGFPNASTFRRGVVCQVASTNFESAAKAGEDRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPSQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRRADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFKEMKFIAENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFFGYKENNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2492 688 SUPERFAMILY EF-G C-terminal domain-like 487 581 IPR035647 -
Ssu1g2492 688 Pfam Elongation factor Tu domain 2 293 363 IPR004161 GO:0005525
Ssu1g2492 688 Pfam GTP-binding protein LepA C-terminus 576 682 IPR013842 -
Ssu1g2492 688 TIGRFAM small_GTP: small GTP-binding protein domain 94 263 IPR005225 GO:0005525
Ssu1g2492 688 Gene3D - 456 567 - -
Ssu1g2492 688 Gene3D Translation factors 274 372 - -
Ssu1g2492 688 PANTHER TRANSLATION FACTOR GUF1-RELATED 80 682 IPR006297 GO:0005525
Ssu1g2492 688 SUPERFAMILY Translation proteins 270 375 IPR009000 -
Ssu1g2492 688 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 272 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 Gene3D - 90 273 IPR027417 -
Ssu1g2492 688 SUPERFAMILY EF-G C-terminal domain-like 380 458 IPR035647 -
Ssu1g2492 688 Hamap Elongation factor 4 [lepA]. 88 686 IPR006297 GO:0005525
Ssu1g2492 688 Pfam Elongation factor Tu GTP binding domain 92 269 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Ssu1g2492 688 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Ssu1g2492 688 Gene3D - 568 642 IPR038363 -
Ssu1g2492 688 CDD LepA 94 271 - -
Ssu1g2492 688 CDD lepA_C 489 568 IPR035654 -
Ssu1g2492 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 296 IPR027417 -
Ssu1g2492 688 Pfam Elongation factor G C-terminus 487 569 IPR000640 -
Ssu1g2492 688 TIGRFAM lepA: elongation factor 4 92 683 IPR006297 GO:0005525
Ssu1g2492 688 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 85 685 IPR027518 -
Ssu1g2492 688 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 80 682 - -
Ssu1g2492 688 SMART EFG_C_a 486 574 IPR000640 -
Ssu1g2492 688 CDD EF4_III 381 456 - -
Ssu1g2492 688 CDD EF4_II 279 364 - -
Ssu1g2492 688 Gene3D Elongation Factor G (Translational Gtpase), domain 3 374 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2492 Ssu-Chr1 68859178 68872865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2492 91 334 Eukaryotic Initiation Factors Gene Family AT3G22980 34.241 3.01e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2492 K21594 - gmx:100809693 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2492 1 68859178 68872865 Ssu1g2492 1 68859178 68872865 ECH