Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2485 ATGGATAAGTACGAGGCCGTTAAGGATTTGGGAGCTGGCAATTTTGGGGTGGCTAGGCTTATGAGGAACAAGGTTACTAAGGAGCTCGTAGCAATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGACATCCTAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGCGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATCTCCGGTGTCCATTTCTGTCATACCATGCAAATATGCCATAGGGATTTGAAACTAGAAAATACCCTTCTAGATGGAAGTCCTGCACCTCGGTTAAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGAACACCAGCTTATATAGCACCGGAAGTTCTTTCTAGGCGAGAGTATGATGGAAAGttgGCTGATGTGTGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGAATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAGTGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGTAGACACCTCCTCTCTCATATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAGCGAGACAGCCCAAACTTTCAGCTTCAAAGTGTGGACGAGATAATGAGAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGTCTGTCAAAGGTTTTGGTTGGGAAGGCGAGGAAGACTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTCCAAATTAGTTAA 1053 0.4321 MDKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGHKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQNDPRNFRKTIQRIVAVQYKIPDYVHISQDCRHLLSHIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFQLQSVDEIMRIVGEARNPPPVSRSVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2485 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Ssu1g2485 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2485 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Ssu1g2485 350 SUPERFAMILY Protein kinase-like (PK-like) 2 299 IPR011009 -
Ssu1g2485 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2485 350 MobiDBLite consensus disorder prediction 316 334 - -
Ssu1g2485 350 Coils Coil 317 344 - -
Ssu1g2485 350 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu1g2485 350 PANTHER SERINE/THREONINE KINASE 2 344 - -
Ssu1g2485 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2485 350 MobiDBLite consensus disorder prediction 305 350 - -
Ssu1g2485 350 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Ssu1g2485 350 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 344 - -
Ssu1g2485 350 CDD STKc_SnRK2 3 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2485 Ssu-Chr1 68749049 68751983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2485 3 306 CBL-interacting serine-threonine protein kinases AT2G26980 37.812 4.04e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu1g2485 Pkinase 3.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2485 K14498 - gmx:547811 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2485 1 68749049 68751983 Ssu1g2485 1 68749049 68751983 ECH
Ssu5g2926 5 75941108 75944378 Ssu1g2485 1 68749049 68751983 PCT