Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2479 ATGTGGCGACTGACATGGCAGTCCAACACAGCTAACATGTCATTGGTCGGTAATGGTTGGAGAAGATTCATTTGGGTGATAATTATGTTCATGCTAGTTTTGGCTCAATGGTTTGTGATGGCAATTGCTCACAAGGTTTTCTGCGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTGTGTTGTTTATGTTTAAGTCAACCATGACAAAAAGTCGATTGAAAACTCTAACCGAGTTAAGACGTGGTAGGGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTCTCTAATATAGACCTTTTGTCTAGGGATGTTGTCTCCATAGGCCGTTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCAGCAAACATGCTTCTATTGGCTAGAAGTGTGATTGTGAATGAAGCTATTCTCACAGGTGAGTCTACTCCTCAATGGAAGATTTCAATCATGGGTAGGGGGATGAAGGAGAAATTGTCAGCAAAGCGAGATAAAAGCCATGTTTTATTTGGTGGAACTAAAATATTGCAACACACTCCAAATAAGAGTTTTCCTCTAAAAGCACCTGGTGGAGGTTGGTTGGCTATTGTCTTGAGAACGAGTTGGGAAAGTGGattcttcattttattcttGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTGTTAAGCTAATGTTTCCCTACAAACGCATGGTGAACATTGATATGATGGTACTTTTGAGGCTTAATGACCCTAAATTGAATGGCTGCGAGATGAATTCTTTATTCATCATCGAACAAGAGTTGATGGATGCAGTTGATCTAAATAGCAGGCAAAAGAGAAAGCTCGAGACAGAGAGCTTACTACAATCAAGGGGTGTCATAGTCGTCTTCAAAGAGGATTATGAAGGTGAAAGGTTAAGCCACCACACTAGTGCAGATCCTGATATTGATAATGACGAGccaatcaaaaataaagttggatatgacttttaa 1020 0.3922 MWRLTWQSNTANMSLVGNGWRRFIWVIIMFMLVLAQWFVMAIAHKVFCVGLWCLDEYWYYSLFTLFVLFMFKSTMTKSRLKTLTELRRGRVDSQILMVHRCGKWVKLSNIDLLSRDVVSIGRSSGQNGEEKSVPANMLLLARSVIVNEAILTGESTPQWKISIMGRGMKEKLSAKRDKSHVLFGGTKILQHTPNKSFPLKAPGGGWLAIVLRTSWESGFFILFLVVFALIAAGYVLVKLMFPYKRMVNIDMMVLLRLNDPKLNGCEMNSLFIIEQELMDAVDLNSRQKRKLETESLLQSRGVIVVFKEDYEGERLSHHTSADPDIDNDEPIKNKVGYDF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2479 339 Gene3D - 69 222 - -
Ssu1g2479 339 PANTHER CATION-TRANSPORTING ATPASE 44 213 - -
Ssu1g2479 339 PANTHER CATION-TRANSPORTING ATPASE 213 239 - -
Ssu1g2479 339 PANTHER CATION-TRANSPORTING ATPASE-RELATED 44 213 - -
Ssu1g2479 339 PANTHER CATION-TRANSPORTING ATPASE-RELATED 213 239 - -
Ssu1g2479 339 SUPERFAMILY Calcium ATPase, transduction domain A 95 191 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2479 Ssu-Chr1 68617954 68646106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2479 45 238 Primary Pumps ATPases AT5G23630 67.890 1.18e-89 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2479 K14950 - gmx:100807022 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2479 1 68617954 68646106 Ssu1g2479 1 68617954 68646106 ECH