Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2478 ATGTCGAGTTTCCACGTCGGTGGCAAGGTGGTGGACCGGGTCGATTTGCTGAGGAAGAAGCAATGGCCGTGGCGCCTCGATGTGTGGCCTTTCGCGATCATATACGGCGCGTGGGTTTCGGCGATTCTTCCCAGCCTCGACTTCGTGGATGCTGCGATTGTTTTCGGCGCGCTCCTTGCGCTTCACATCCTCGTTTGGCTCTTCACTGGTTGGTCCGTTGATTTCAAATGTTTCGCCCATTATAGCAAGGTTAGGAATATTGAGCAGGCCGATTCTTGCAAGATAACTCCGGCTAAGTTCTCGGGTTCTAAAGAAGTTGTGCCGCTTCATTCTCGGAAAAGTTCTGCAGGTTCTTCATCAGCGGTGGATTTGGAAGAGAAATACtttgattttagaaaacaatGTTTTGTATATTCAAAGGAGAAGGGGACTTTTTGCAAGCTTTCCTACCCTACCAAAGAAACATTTGGATATTATCTCAAGTGTAGTGGCCATGGCTCTGAAGCAAAAGTTCTTGTTGCTACTGAGAAATGGGGACGGAATGTATTTGATTATCCTCAGCCAACATTTCAAAAATTGCTGAAAGAGCACTGCATGGAGCCTTTTTTCGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTAACTGAGTTAAGACGTGTCAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGACCTTTTGCCTGGGGATGTTGTCTCCATAGGCCGCTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATCGTGGGTAGGGGGATGGAGGAGAAATTGTCAGCAAAGCGAGATAAGAGCCATGTTTTATTTGGTGGAACTAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGCGGCTGCTTGGCTGTTGTCCTGAGAACGGGGTTTGAAACAAGCCAAGGAAAGTTGATGCGAACTATCTTGTTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTGTTCATTTTATTCTTGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTATGAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGACGTGGGATTTTTTGCACAGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATATGCTGTTTTGACAAGACAGGGACACTGACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGAATGGAACTGCAGATTTGGAATCCGATACGAGTAGAGTGCCTGTGCGAACAGTAGAAATCCTGGCTTCATGCCATGCATTGGTATTTGTGGAGAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCGCTTAAGGGAATTGACTGGAGTTATAAATCTGACGACAAGGCTGTTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCATCGGTACCATTTTGCATCTCACTTGAAACGAATGGCAGTTGTTGTTCGCATTCAAGAGGAATTTTTCGCCTTTGTGAAGGGTGCTCCAGAAGTTATACAAGATAGGCTCATTGATGTACCGCCATCGTATGTTGAGACCTACAAAAAGTACACACGTCAAGGGTCTCGTGTTCTTgctcttgcttacaagtctctTGCTGATATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGTGGAGAGTGGACTCACTTTTGCCGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTATCTGAATTAAAAGCATCCTCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGCTCATATTATATCAAAACCTACGTTAATTCTTGGCCCAGCACGAAATGGTGAGGGATATAATTGGATGTCCCCTGATGAGACTGAAAACATTCGCTACAGTGAGAATGAGGTTGAGTCTTTATCAGAGACTCATGATCTGTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCGGGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTTAAAACAGTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAATTCCTCTTATTCCTCCAAGGACGAAGGTTCAAAATCTGTCAAGCAAAAGAAATCTAAGCCTGCACTGGACACATCTGGAAAGACTGCTGGTGAAGGGACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACTAGCCACTCATCTGTTAACCGTCATCAGGCAGCTGTTGAGATGCAACGACAGAAGCTTAAGAAGATGATGGATGAGCTTAACGAGGAAGGAGATGGTCGTGCACCCATGGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCACCGACATAATTCGTCAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGCCTCAACTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTGTCTTCACTGCTGCATTTTTCCTCTTCATATCACATGCACGCCCTCTTCCCACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCTTGGGACAATTTTCTATTCACCTGTTTTTCCTGATTTCATCTGTGAAAGAAGCTGAAAAATACATGCCAGATGAATGCATAGAACCTGATGCAGATTTTCATCCCAACCTGGTGAATACCGTTTCCTATATGGTGAGCATGATGCTTCAGGTGGCCACATTCGCTGTGAACTATATGGGCCACCCCTTCAACCAGAGTATTTCTGAGAACAGGCCGTTCCGGTATGCACTTGTTGCTGCTGTTGTTTTCTTTACTGTGATTACATCTGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTAGTGCCATTGCCAGTGGGATTGAGGGATAAACTATTGATTTGGGCGTTTCTAATGTTTTTGGTATGCTATACGTGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATCCCAGCTTGGAAGAAGCGACAACGGCTGGCTGTATCTaatttagaaaagaagaaacaggTCTAA 3567 0.4365 MSSFHVGGKVVDRVDLLRKKQWPWRLDVWPFAIIYGAWVSAILPSLDFVDAAIVFGALLALHILVWLFTGWSVDFKCFAHYSKVRNIEQADSCKITPAKFSGSKEVVPLHSRKSSAGSSSAVDLEEKYFDFRKQCFVYSKEKGTFCKLSYPTKETFGYYLKCSGHGSEAKVLVATEKWGRNVFDYPQPTFQKLLKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIVGRGMEEKLSAKRDKSHVLFGGTKILQHTPDKSFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLMKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTADLESDTSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDDKAVPKKGNGHPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLIDVPPSYVETYKKYTRQGSRVLALAYKSLADMTVSEARSLDRDIVESGLTFAGFVVFNCPIRSDSATVLSELKASSHDLVMITGDQALTACHVASQAHIISKPTLILGPARNGEGYNWMSPDETENIRYSENEVESLSETHDLCVGGDCIEMLQQTSAHLRVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSYSSKDEGSKSVKQKKSKPALDTSGKTAGEGTSKAKVASKSDSTSHSSVNRHQAAVEMQRQKLKKMMDELNEEGDGRAPMVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLFFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVVFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLIWAFLMFLVCYTWERLLRWAFPGKIPAWKKRQRLAVSNLEKKKQV 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2478 1188 MobiDBLite consensus disorder prediction 833 847 - -
Ssu1g2478 1188 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Ssu1g2478 1188 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Ssu1g2478 1188 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Ssu1g2478 1188 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Ssu1g2478 1188 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Ssu1g2478 1188 Gene3D - 483 668 IPR023299 GO:0000166
Ssu1g2478 1188 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 45 1145 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Ssu1g2478 1188 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 509 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g2478 1188 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 780 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g2478 1188 Coils Coil 889 913 - -
Ssu1g2478 1188 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Ssu1g2478 1188 PANTHER CATION-TRANSPORTING ATPASE 1 1179 - -
Ssu1g2478 1188 Pfam E1-E2 ATPase 258 468 - -
Ssu1g2478 1188 MobiDBLite consensus disorder prediction 833 900 - -
Ssu1g2478 1188 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Ssu1g2478 1188 Gene3D - 226 388 - -
Ssu1g2478 1188 SFLD Haloacid Dehalogenase 469 951 - -
Ssu1g2478 1188 SUPERFAMILY HAD-like 483 835 IPR036412 -
Ssu1g2478 1188 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1165 IPR023298 -
Ssu1g2478 1188 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Ssu1g2478 1188 CDD P-type_ATPase_cation 174 1103 - -
Ssu1g2478 1188 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1179 - -
Ssu1g2478 1188 SFLD p-type atpase 469 951 IPR044492 -
Ssu1g2478 1188 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Ssu1g2478 1188 Gene3D - 669 844 IPR023214 -
Ssu1g2478 1188 MobiDBLite consensus disorder prediction 866 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2478 Ssu-Chr1 68568763 68586978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2478 1 1188 Primary Pumps ATPases AT5G23630 77.834 0.0 1914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2478 K14950 - gmx:100789385 2267.27