Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2476 ATGGAACCGTGGGGTGTTCATCATCGAGTCATGTTCATCGGTCAGCATGAGGAAGATGGAACTCCTTCTGATACTTCTAAGGGAGAGGAATCAAacgatgaagaagaaaaaatcattaaaactgAACCCATCTTTGTGCCagaaattaagaaaaggaaGCGCCTTAGCCTTAGTCAGCTTAAAGAGGTGAAAGAGGAGTCATGTGGGAAGCAAAGCAGTAACAAGGTTAAGAAAAAGAAGCATGAAAGTAAGGATAGATGGTCAGCTGAGAGGTATCAGTTGGCTGAGCAAAACATGTGGGAGGTGCTAAAGGCTGAAGGAGCGACATTTGAAAACCCAATAACCCGACCTGCACTAAGATTGGCTGCCCGCAAACACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGATGGTAAAGTGGCACCTGGAGGGACTGAGCGATTCCGAAGATGGTTCAATACCAATGGAATCATGGAGTATTGGTTGGAGAGTGCTGACTTGGACAAGGTGCGCCAGGAAGCAGGGGTGCAGGACCCTTACTGGATACCACCATATAGGGCAGGCAGTACCCCCTCTCAGAATACTGATTCTTCTGGTGAATTGAAACAGCTTAAAATAGAATTGGTGCAAATGAAGAAAGATATGCAGGAGCTCATTGCcaagaaggaagagaaaaatgatATCAATATGATGGAGGAGACACACAAGGAATTTGTGAAGTGGAAAGCTATGACTGACCATCGCCTTACTGAAATCATGACTTCTTTGAAGGGTGTGCAGGGAAATTATGGTGAATTGGTGATTTGGAAAACTAAAGTTGAGCAACAACTTGTggaaataactaataaattgaATGATCTTCAAGCATCTAGGGAGTGCACCACTTTTAGTCCTCCTTCAGAAAGGTGGAAAGATTGGATTGAAAGCACCAACCTAGACAATATTCAGGAAGATGCATTTGCAACTTGGATTGGGAATCCAGAGCTACTTAATGTTCCAGAAGAGGTTGTACTTGAAGATCCCCACACAGCCGTACCAACACAGCCACCCAACGAGGAACTGATTAACAAGAAGAGCAATGTGCTGGAGTTGGTTCCTCTTAAACAAGAAGATCAACCTAATGTGACCCCTGATTCTTCTACAACTGTTAATTCGAAGTCAGACCTTGACAACTCATTGATTATGTTTCAGGAGATGTTTATGGATTTATacaaatggaaagaaaaaatggaaCAGCAGCTGATGGAGGTATCAAATACTGTATATGGTATGCTGGCAATGAAGTAG 1299 0.4026 MEPWGVHHRVMFIGQHEEDGTPSDTSKGEESNDEEEKIIKTEPIFVPEIKKRKRLSLSQLKEVKEESCGKQSSNKVKKKKHESKDRWSAERYQLAEQNMWEVLKAEGATFENPITRPALRLAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESADLDKVRQEAGVQDPYWIPPYRAGSTPSQNTDSSGELKQLKIELVQMKKDMQELIAKKEEKNDINMMEETHKEFVKWKAMTDHRLTEIMTSLKGVQGNYGELVIWKTKVEQQLVEITNKLNDLQASRECTTFSPPSERWKDWIESTNLDNIQEDAFATWIGNPELLNVPEEVVLEDPHTAVPTQPPNEELINKKSNVLELVPLKQEDQPNVTPDSSTTVNSKSDLDNSLIMFQEMFMDLYKWKEKMEQQLMEVSNTVYGMLAMK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2476 432 MobiDBLite consensus disorder prediction 11 42 - -
Ssu1g2476 432 Coils Coil 274 294 - -
Ssu1g2476 432 PANTHER DYAD PROTEIN 4 431 - -
Ssu1g2476 432 MobiDBLite consensus disorder prediction 61 86 - -
Ssu1g2476 432 PANTHER PROTEIN DYAD 4 431 IPR044221 GO:0007131|GO:0051177|GO:0051321
Ssu1g2476 432 Coils Coil 205 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2476 Ssu-Chr1 68531286 68533420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2476 86 167 PHD Transcription Factor Family AT5G22260 40.964 3.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2476 - - gmx:100806484 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2476 1 68531286 68533420 Ssu1g2476 1 68531286 68533420 ECH