Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2471 ATGTCAAAGTCGAACACCGCGGTCGCACCAAAGCATGCGAGGGTTCTCCCGTGCCGAACAAAGGATGTGGGGGAAGTGTACACGCTGGGGCGAGAACTGGGCAAGGGTCAAAGCGGGATCGCGTTCCTGTGCACGCACAAGGGCACGGGACGCACCTACGCGTGCAAGTCAATCCCGAAGCGGAAGCTGCTGCGCGAGGGTGATTACGACGACGTTTTGAGAGAGGTTCAGATAATGCAACACTTGTCGGAGATCCCGAACGTGGTGAGGATCTACGACACCTACGAGGATGCTTCGTCGTTTCACCTGATCATGGAGCTCTGCGAAGGTGGCGAGTTATTCCACAGCATCCTGGAGAAGGGCCACTACAGCGAGAGAGAGGCCGCGAATTTGATTAGGAACATCGTTGAGATTATTGAGGGCTGTCATTCCCGCGGGGTCATCCACAGGGACATCAAACCTGAGAACCTTTTGTTCGATGCCGTTGGGGAAGATGCTAAACTCAAAATCATTGATTTCGGCTTGTCTGTTTTTTATGAGCCAGGTGAAACCTTTTGTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCATAAGCTTTATGGACCTGAATCAGACGTGTGGAGTGCTGGTGTTATTTTGTACATCTTATTAAGTGGAGTGCCACCATTTTGGGCTGAAACTGAGCAGGGGATTTTCCGACAGATTTTGCTAGGAAGACTTGATTTTCAGTCTGAGCCATGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCAAAAAATGCTTGATCAGGATCCAAAAACAAGGCTTACAGCTCATGAAGTACTCTGTGTTGTATGGAAGACCTCCCCCTACTATTGTTCTACTTATAGAAGGAGTAGCAAAAGTGGGATTGGTTGCAAGAACATGATGAAGCACTCACTCAAATATCATCTAATGCCCAAGATCAAATGA 966 0.4865 MSKSNTAVAPKHARVLPCRTKDVGEVYTLGRELGKGQSGIAFLCTHKGTGRTYACKSIPKRKLLREGDYDDVLREVQIMQHLSEIPNVVRIYDTYEDASSFHLIMELCEGGELFHSILEKGHYSEREAANLIRNIVEIIEGCHSRGVIHRDIKPENLLFDAVGEDAKLKIIDFGLSVFYEPGETFCDVVGSPYYVAPEVLHKLYGPESDVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRLDFQSEPWPSISDSAKDLIQKMLDQDPKTRLTAHEVLCVVWKTSPYYCSTYRRSSKSGIGCKNMMKHSLKYHLMPKIK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2471 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Ssu1g2471 321 PANTHER CDPK-RELATED KINASE 5 284 - -
Ssu1g2471 321 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Ssu1g2471 321 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 284 - -
Ssu1g2471 321 Pfam Protein kinase domain 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2471 321 Gene3D Transferase(Phosphotransferase) domain 1 114 312 - -
Ssu1g2471 321 CDD STKc_CAMK 26 284 - -
Ssu1g2471 321 SUPERFAMILY Protein kinase-like (PK-like) 27 294 IPR011009 -
Ssu1g2471 321 SMART serkin_6 27 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2471 321 Gene3D Phosphorylase Kinase; domain 1 29 113 - -
Ssu1g2471 321 ProSiteProfiles Protein kinase domain profile. 27 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2471 Ssu-Chr1 68417702 68438224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2471 7 284 EF-hand Containing Proteins AT5G23580 67.986 2.83e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu1g2471 Pkinase 3.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2471 K13412 - gmx:100805961 463.381