Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2445 ATGGATCCGGACGCATTCACCGCGAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCGGCCGCGGCGCCCCCCCGCCCGCCGCTCCTGGACTATGTGGTGGCTCCGCCGGTGGCGCCGGCGTACCATCCGGCGAGGGCGCCGCGCGAGCTCGGCGGGCTGGAGGAGCTGTTCCAGGCCTACGGCATCCGGTACTACACGGCGGCGAAGATCGCCGAGCTCGGGTTCACGGTAAGCACACTGGTGGACATGAAGGACGAGGAACTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGTCGCGTCGACGACGACGACATCAAGCGCCGCAACAACAACCTCCTCTCCACCGACACCACCACCAACGCTCTCGATGCCCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTTGCGGCGGAGGAGCGGAGGAAGCAGCAGAGGAGGCGGAGGACGAGGATGAAGGCGAGTCTTCATAACGACGAGAATGAGGAGCTTGAAGAGGAGGAAGGAGAAGAGAACGATGAAGGGAACAACAACGTTGGCGGAGGTTCTGAGAGGCAAAGAGAGCACCCGTTCATCGTGACGGAGCCTGGGGAGGTTGCACGTGGGAAGAAGAACGGTTTGGACTATCTGTTTCACCTCTACGAGCAATGCCGTGAATTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCTAGCTACATCAACAAGCCGAAGATGCGACACTACGTGCACTGCTACGCCTTGCATTGTCTTGACGAGGAGGCGTCGAACGAGCTTCGAAGGGCGTTCAAGGAGCGAGGGGAGAACGTGGGGGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGACATTGATGCCATATTCAACGCGCATCCTCGTCTTTCCATATGGTACGTCCCAACGAAGCTCCGTCAGCTTTGTCACGCCGAGAGGAACAGCGCCGCCGCCTCGAGCTCTGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAA 1200 0.6075 MDPDAFTASLFKWDPRTVLPAAAPPRPPLLDYVVAPPVAPAYHPARAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDDDIKRRNNNLLSTDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVAAEERRKQQRRRRTRMKASLHNDENEELEEEEGEENDEGNNNVGGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2445 399 Coils Coil 188 215 - -
Ssu1g2445 399 MobiDBLite consensus disorder prediction 149 238 - -
Ssu1g2445 399 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 221 385 IPR035209 GO:0003677
Ssu1g2445 399 PANTHER PROTEIN LEAFY 1 399 IPR002910 GO:0003677|GO:0006355
Ssu1g2445 399 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Ssu1g2445 399 Gene3D Protein LEAFY 222 391 IPR038276 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2445 1 383 Orphan Transcription Factor Family AT5G61850 66.917 8.14e-165 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Ssu1g2445 C_LFY_FLO 8.9e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2445 - - gsj:114416001 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2445 1 68082196 68084829 Ssu1g2445 1 68082196 68084829 ECH