Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2441 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTTTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGAATACGGAAGCCAAAATCTATTCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCGGCATCACCTGGCAGTATTTTGAATACTTCGTCACCCCTTGAAACTAATGCAAAAACAGGCTTGCGAATGTCTCAGACTAATCTATCTGGGGAAATTACAGAAGACCTACATTTTGGTGGAGAAGCAGGCAGTATAGAGATACTGAAGGATTCCACGGAATCATTGAATTATCATAAGAGAGCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCAAGTGAAAGTAGTCTATTTTCAAGCTCGTTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATAGCATGCTATCTGATCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATGAATCTCTTGAAGAAATTGAGGCTGACACTATTGGTTATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGATGAGTTAGGATGCAGTACTCACACTAGAACGAATGATGattttgaagattttgattTATTCAGCAGTGGTGGAGGTATGGAGTTGGAAGGAGATGAACATCTAATTTCTGGAAAAAGAACCAGTTGCGTGGATGGAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGCCATGGTACTCTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTTAAACagatttttgggttttatggAGAAATTAGAGAAATCAATGAATATCCACAAATGAATCATGTCAAATTCATCGAATTTTATGATGTCCGAGCTGCAGAAGCTTCACTTCGTGCATTGAACGGGATCTGCTTTGCTGGGAAGCACATCAAGCTTGAACCTGGCCTTCCCAAGATTGCAACATGTATAATGCAGCAGTCTCAGAAGGGACAAGATGAACCCGATCTTGGTCATAGTCTGAGTGACAATGTATCTTTAAGACATAAGGCAGGAGTGTCATCTGGATTTATTGCATCTGGTGGCGGCTTGGAAAATGGATATAGTCAGGGATTTCATTCCGCAACACGGCTACCTGCTTTTATTGATAAAACATTGTTTCATGTGAATTCTAGCATTCACAAGACCACAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTTTGAGACCAGTAACGCTATTGATGCAATGAAATTTGCATCCATTCCAAGGTTCCATCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCGACGGAATCATCTGACAGCAGGCACATTCAGGGAATTACCTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGGAACAACCCCCATCATGGACTTTATCATATGTGGAATGGCTCCAGCTTGCATCAGCAACCTCCGTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTTCTCCATGTCTTCCCCAGATACCCAGCTTTCCTAGAACACCACCTCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCCGTTGTTACAGCCTCACCTTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGACACTTCTGGGTTTAGATTGGGTTCTGTAGGAAGTCCAGGTTTTCATGGTGGCTGGCAGTTGCATCCTCCGGCTTCTCACAACATATTTTCTCATGTTGGTGGGAATGGTCCAGATATGACGTCAAATACTGGGCAGGGCTCTCCAAAGCAGTTGTCACATGTTTTCCCTGGGAGACTTCCCATGactttggtttctaaatttgATTCTACCAATGAACGAATGAGAAACCTCTATCCTCGTAGAAGTGAACCAAACACTAACAACAATACTgataaaaaacaatatgaacTTGACCTAGGCCGCATATTACGTGGGGATGACAACCGAACAACGctcatgataaaaaatattcccAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGTTATTTGGAAATTCTTATGCTTTTAA 2589 0.4005 MPSEIMEKRGVSASSHFLDDISYASEKNIGIRKPKSIHDHFLQGKSEMAASPGSILNTSSPLETNAKTGLRMSQTNLSGEITEDLHFGGEAGSIEILKDSTESLNYHKRAWSNVHRQPASSSYGLIGSKIVTNAASSESSLFSSSLSEMFSQKLRLLGNSMLSDQPITVGSLPEEEPYESLEEIEADTIGYLLPDEDDLFSGVTDELGCSTHTRTNDDFEDFDLFSSGGGMELEGDEHLISGKRTSCVDGDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIREINEYPQMNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCIMQQSQKGQDEPDLGHSLSDNVSLRHKAGVSSGFIASGGGLENGYSQGFHSATRLPAFIDKTLFHVNSSIHKTTRGASAGKVSGVFETSNAIDAMKFASIPRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGITSTGNLAEFNAGGNGNNPHHGLYHMWNGSSLHQQPPSNAMLWQKTPSFVNGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDTSGFRLGSVGSPGFHGGWQLHPPASHNIFSHVGGNGPDMTSNTGQGSPKQLSHVFPGRLPMTLVSKFDSTNERMRNLYPRRSEPNTNNNTDKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKVIWKFLCF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2441 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 855 - -
Ssu1g2441 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Ssu1g2441 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Ssu1g2441 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Ssu1g2441 862 Gene3D - 354 453 IPR012677 -
Ssu1g2441 862 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 855 - -
Ssu1g2441 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Ssu1g2441 862 SUPERFAMILY RNA-binding domain, RBD 267 427 IPR035979 GO:0003676
Ssu1g2441 862 SUPERFAMILY RNA-binding domain, RBD 794 856 IPR035979 GO:0003676
Ssu1g2441 862 SMART rrm1_1 356 424 IPR000504 GO:0003723
Ssu1g2441 862 SMART rrm1_1 271 339 IPR000504 GO:0003723
Ssu1g2441 862 Gene3D - 264 353 IPR012677 -
Ssu1g2441 862 CDD RRM1_MEI2_like 269 344 IPR034453 -
Ssu1g2441 862 Pfam RNA recognition motif 2 792 855 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2441 Ssu-Chr1 67940663 67946449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2441 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 2.83e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2441 - - gmx:100797616 1550.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2441 1 67940663 67946449 Ssu5g2961 5 76393006 76399663 ECH
Ssu1g2441 1 67940663 67946449 Ssu1g2441 1 67940663 67946449 ECH
Ssu5g2961 5 76393006 76399663 Ssu1g2441 1 67940663 67946449 PCT