Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2435 ATGTTCCGGCAACAGCTCCAGTGCATGGAAGAGAGTTCGGAATCGTTACGCTCGAGATGTATGAAGTTCTACAAAGGATGCCGAAAGTACACgGAAGGGCTTGGAGAGGCATATGATGGAGACATCGCATTTGCAAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTTATGACCAAATTTGCTATTGCTTTGAGAGAAATCAGTACATACAAGGAGCTTCTTCGGTCACAGGCGGAGCACATGCTGAATGACCGGTTACTAAACATGCTGAACGTCGATATGCTTGATGTCAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCGTTGAGAAAAAGCACTAGGATGGATGTTGCCGCTGTCGTAGAAGAGGAATTGCACAATGCAAGAACCTCATTTGAGGAAGCTCGTTTCAATCTGGTCAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGATGCTGTCACCGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACATGAGCTGGAGCCTTTCATTATCGAGGTTTTGGCTTATACACAAAAGGCAAGGGAAAGTTACAATGAGGAACAGATTAGTCTTTGTGAAAGAATGCTGgagaacaaaaaatatgttcatCATGGAAGTATGTTGTCCTTGAATCCCTGTAGAGATGTGGTTCAAGTGCAGCCTTTTTCTAGGATATCAAATAAAGTGGCAGATGCTGTTACAGAATCTGCTGAAAATGGAAGGGTTCAAATCATTCGGCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGGCTGGAAGAGAAGGTATTTCATTCTTGATAGTTGTGGAACGCTTTACTACTTTCGCAAACCGTGGAATGGATTACATCAGGGTGGCAATCAGTCATCTTTACACAGAAATTGTGCCACTGATAATAGTGCTGGAATTTTGAGTCGCCTGCTGTCTTCACATAACCATGGACTTATTCTCCCTGATGAAAAATCTATAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGATTTATACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAGACACTGCCAGATGACTCAGAAAGCAGTGATTGTTACTCTGCCAGCAAGCTTTTTTTGTTACAAGGTTCTCCAGATGATGATCATGCAGTGAGTGGGGATTCTATGTCATCTGAAGACTTGCAGAAGAATAAGCagagtataaaaaatgaaaagccaATTTATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTAACACTTGATGTAAAAGTATGGGATTCCTCTGTCTTAACCATGTTTCAGTCAGTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCATTCATCAAGTACTTCGCAAACTGATGACACTCCTGATGGTTCATCCAAGACACCCAAAAAGTTATTTCATGCGAGAAAACCAGCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCaaagTATGCTGCGAAAGTCTTTGTTCGCCGGATAACCTATAACAACCGTCTCCTTTCGGCGGCACAACAGGTGGCAGAAAGCATCAGTGCCAATGACATGAAAGCAGTGTACCGGCACATTGTCAAGTCAGATGTGGATGTCAATGCTATTGGTGGGGATGCATTGTATGGTTTTTCTTCCAACGTGCCTTCTTCAATTAATCCAAACAAATCATCAGAAAGTAAAACTCGACTAGTGGAGGACATACAAGATAGTTCTAGTGTGCTTCACCTTGCATGCCTAGCTAGTGATGATGCAATGGTAGAGCTGCTCCTACAGTATGGGGCAGATTTAAATGCTATTGATTCCAGAGGGAGGACACCACTACATTACTGCATTATGAGAGGGAAGAAAGCAACTGCAAAAGTACTTATTACAAGGGGGGCCAATCAACATGCCGTAGACAAAGAAGGCAACACTCCTCTTAAGCTTGCACCAGAACCTGACACTGTTGGCAAAGATATTGTTGTTCTTAACAAGCAAATGGCATGGCCTCAAAACTTGCTAGAAAAATGA 2361 0.4189 MFRQQLQCMEESSESLRSRCMKFYKGCRKYTEGLGEAYDGDIAFASALESFGGGHSDPLFVTLGGPVMTKFAIALREISTYKELLRSQAEHMLNDRLLNMLNVDMLDVKEARRRFEKASLVHDQAREKFMSLRKSTRMDVAAVVEEELHNARTSFEEARFNLVSALHNVEAKKRFEFLDAVTGVMDAHLRYYRQGYQLLHELEPFIIEVLAYTQKARESYNEEQISLCERMLENKKYVHHGSMLSLNPCRDVVQVQPFSRISNKVADAVTESAENGRVQIIRQGYLSKRSSNLRGGWKRRYFILDSCGTLYYFRKPWNGLHQGGNQSSLHRNCATDNSAGILSRLLSSHNHGLILPDEKSIARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKIYTLQAENALDQMDWMEKITGVIASLLSAQTLPDDSESSDCYSASKLFLLQGSPDDDHAVSGDSMSSEDLQKNKQSIKNEKPIYVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLTMFQSVGNLFANSVWEELLHSSSTSQTDDTPDGSSKTPKKLFHARKPAHDDPISLKERFIHAKYAAKVFVRRITYNNRLLSAAQQVAESISANDMKAVYRHIVKSDVDVNAIGGDALYGFSSNVPSSINPNKSSESKTRLVEDIQDSSSVLHLACLASDDAMVELLLQYGADLNAIDSRGRTPLHYCIMRGKKATAKVLITRGANQHAVDKEGNTPLKLAPEPDTVGKDIVVLNKQMAWPQNLLEK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2435 786 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Ssu1g2435 786 ProSiteProfiles Ankyrin repeat region circular profile. 686 717 - -
Ssu1g2435 786 ProSiteProfiles Ankyrin repeat region circular profile. 719 751 - -
Ssu1g2435 786 Gene3D Arf GTPase activating protein 454 616 IPR038508 -
Ssu1g2435 786 SMART ANK_2a 719 748 IPR002110 GO:0005515
Ssu1g2435 786 SMART ANK_2a 686 715 IPR002110 GO:0005515
Ssu1g2435 786 SMART 5bar 1 208 IPR004148 GO:0005515|GO:0005737
Ssu1g2435 786 ProSiteProfiles PH domain profile. 279 417 IPR001849 -
Ssu1g2435 786 Pfam Putative GTPase activating protein for Arf 476 610 IPR001164 GO:0005096
Ssu1g2435 786 Gene3D - 669 770 IPR036770 -
Ssu1g2435 786 Pfam Ankyrin repeats (many copies) 689 740 IPR002110 GO:0005515
Ssu1g2435 786 SMART arf_gap_3 473 617 IPR001164 GO:0005096
Ssu1g2435 786 ProSiteProfiles BAR domain profile. 1 215 IPR004148 GO:0005515|GO:0005737
Ssu1g2435 786 CDD ArfGap 479 604 - -
Ssu1g2435 786 PANTHER CENTAURIN/ARF 1 776 IPR045258 GO:0005096
Ssu1g2435 786 CDD BAR_SFC_plant 5 205 IPR035670 -
Ssu1g2435 786 Coils Coil 108 128 - -
Ssu1g2435 786 Gene3D - 272 433 IPR011993 -
Ssu1g2435 786 SUPERFAMILY Ankyrin repeat 686 761 IPR036770 -
Ssu1g2435 786 SUPERFAMILY PH domain-like 280 431 - -
Ssu1g2435 786 SUPERFAMILY ArfGap/RecO-like zinc finger 472 612 IPR037278 -
Ssu1g2435 786 MobiDBLite consensus disorder prediction 562 587 - -
Ssu1g2435 786 Gene3D Arfaptin homology (AH) domain/BAR domain 1 238 IPR027267 -
Ssu1g2435 786 ProSiteProfiles Ankyrin repeat profile. 719 751 IPR002110 GO:0005515
Ssu1g2435 786 MobiDBLite consensus disorder prediction 573 587 - -
Ssu1g2435 786 CDD PH_ACAP 282 421 - -
Ssu1g2435 786 PRINTS HIV Rev interacting protein signature 527 548 IPR001164 GO:0005096
Ssu1g2435 786 PRINTS HIV Rev interacting protein signature 485 504 IPR001164 GO:0005096
Ssu1g2435 786 PRINTS HIV Rev interacting protein signature 504 521 IPR001164 GO:0005096
Ssu1g2435 786 SUPERFAMILY BAR/IMD domain-like 1 302 IPR027267 -
Ssu1g2435 786 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 776 - -
Ssu1g2435 786 Pfam PH domain 281 416 IPR001849 -
Ssu1g2435 786 ProSiteProfiles ARF GTPase-activating proteins domain profile. 473 617 IPR001164 GO:0005096
Ssu1g2435 786 SMART PH_update 280 419 IPR001849 -
Ssu1g2435 786 Pfam BAR domain of APPL family 2 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2435 Ssu-Chr1 67820531 67828152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2435 483 614 C2H2 Transcription Factor Family AT4G21160 42.647 1.05e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2435 K12489 - gmx:100797073 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2435 1 67820531 67828152 Ssu5g2965 5 76510467 76522140 ECH
Ssu1g2435 1 67820531 67828152 Ssu1g2435 1 67820531 67828152 ECH
Ssu5g2965 5 76510467 76522140 Ssu1g2435 1 67820531 67828152 PCT