Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2433 ATGGCATCATCGGAGGTGACGATGAAGGGAAATTGCATGAACCATAACGACGGCGGAGCTGCGGAGGCTCATTCGCCGTCCACGGCGAAAGACGCGGAAGCAGCACTTTTCAGGGAACTGTGGCACGCTTGTGCCGGTCCTCTCGTGACGGTGCCGAGGGAAAGAGAGCGTGTCTTTTATTTTCCTCAGGGACATATTGAACagGTGGAGGCGTCGACGAACCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCGCCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCGGAGCCCGACACGGATGAGGTGTTTGCCCAGGTTACCTTGCTTCCGGAGCCAAATCAAGATGAGAATGCCGCGGAGAAAGAGCCTCCGCCGCCTCCGCCGCCGCGGTTTCACGTTCATTCTTTCTGTAAGACTCTGACGGCGTCCGATACCAGCACCCACGGTGGGTTTTCCGTGCTGAGACGGCATGCGGATGAATGTCTTCCTCCTCTGGATATGTCCAAGCAGCCACCCACCCAGGAATTGGTGGCCAAGGATTTGCACGGGAGTGAGTGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTCGCTGGAGATGCATTTATATTTCTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAACGTTCCATCCTCAGTTATCTCCAGCCACAGCATGCATCTCGGGGTCCTTGCAACGGCCTGGCATGCCATCTTGACGGGGACCATTTTCACTGTATATTACAAGCCTAGGACCAGTCCCGCTGAGTTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAATAATCATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAGGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGTCTCAAGGTGAGATGGGATGAAACATCTAACACACCTCGTCCCGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCGCCAGCTCTGAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCATCTCCAGATTCTTCCGTTCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACCGACAAATGGTTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGATACTGCTGAGAAGTCTGCTGCTTGGCCACCTGCAGTAGATGATGAAAAGATTGATGTTGTTTCTACTTCAAGGAGGTATGTTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCGGATCTTCTTTCAGGCTTTGGGGCCAGTGGGGATCCTTCTCATTCGTCCTTGATGGATCAAAGGAGCCCTGTAGCTTATCCTGCTAGAAAACAATCGTCGGATCATGAAGGCAAACTTCACGTGCCTCATCCGTGGCCTGTAGTATCCCCTAGTCTGTCACTGAACATCTTGGACTCTAATACAACAGGTCCTGCACATGTTGGTGATACAACTTACCAAGCTCGGGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGTACTGCATGGTCATAAAGTTGAGCATTCACGTGGAAACTTGATGCCACCCCCACCTGCACCCCTAACTCAATATCAGAGTCCTTGTTCAAGAGAGCTTATGTCAAAACCAGTGTCAGCAAAAACTTATGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTGGCCCCATTGTACCAGAGCCTTCTGTATCACAAAGAAATGTGAGCGAGCCTGCTGGTCAGATGCATCTTACACCACACCAACAAAGAACATCTGAAAATGATCAGAAGTCAGACCACTCAAGACCTGCAGATGATCTAGTTGTTGATGACCATGACAGGCCATTGCAGACTTCTCAGTTGCATATGAAAGATATTCAAGCTAAACCTCTCGGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCAGTGGACCTTACAAAGTACAGTGGCTATGATGAATTAGTAGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTGTTGTCAACTAAAAAAGGTTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTGGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCAGGTACCTTGGGttcaaaaaatgaagagaatcaGTCGGCTAGTGAAGGTGCAGATGCCAAAGATGTTAAATGTCAGCCGCATCAAAAGTTCAATTCAGAAAATGGCCTTGACGCCTGA 2520 0.4813 MASSEVTMKGNCMNHNDGGAAEAHSPSTAKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAAEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGSEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPTNGFPRVLQGQEFSTLRGNFAESNESDTAEKSAAWPPAVDDEKIDVVSTSRRYVSESWMSMGRNEPTYSDLLSGFGASGDPSHSSLMDQRSPVAYPARKQSSDHEGKLHVPHPWPVVSPSLSLNILDSNTTGPAHVGDTTYQARGNLRYSAFGEYPVLHGHKVEHSRGNLMPPPPAPLTQYQSPCSRELMSKPVSAKTYEAVKPKDGDCKLFGISLISGPIVPEPSVSQRNVSEPAGQMHLTPHQQRTSENDQKSDHSRPADDLVVDDHDRPLQTSQLHMKDIQAKPLGGSARSCTKVHKKGIALGRSVDLTKYSGYDELVAELDQLFEFGGELLSTKKGWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLGSKNEENQSASEGADAKDVKCQPHQKFNSENGLDA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2433 839 Gene3D - 708 800 - -
Ssu1g2433 839 MobiDBLite consensus disorder prediction 641 685 - -
Ssu1g2433 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 818 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g2433 839 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Ssu1g2433 839 SUPERFAMILY CAD & PB1 domains 714 788 - -
Ssu1g2433 839 Gene3D - 139 244 IPR015300 -
Ssu1g2433 839 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g2433 839 Gene3D - 305 375 - -
Ssu1g2433 839 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Ssu1g2433 839 MobiDBLite consensus disorder prediction 357 424 - -
Ssu1g2433 839 MobiDBLite consensus disorder prediction 800 839 - -
Ssu1g2433 839 SMART B3_2 142 244 IPR003340 GO:0003677
Ssu1g2433 839 ProSiteProfiles PB1 domain profile. 711 793 IPR000270 GO:0005515
Ssu1g2433 839 PANTHER AUXIN RESPONSE FACTOR 2 16 818 - -
Ssu1g2433 839 Pfam AUX/IAA family 708 798 IPR033389 -
Ssu1g2433 839 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Ssu1g2433 839 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g2433 839 MobiDBLite consensus disorder prediction 665 685 - -
Ssu1g2433 839 MobiDBLite consensus disorder prediction 394 424 - -
Ssu1g2433 839 MobiDBLite consensus disorder prediction 641 664 - -
Ssu1g2433 839 CDD B3_DNA 140 242 IPR003340 GO:0003677
Ssu1g2433 839 MobiDBLite consensus disorder prediction 814 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2433 Ssu-Chr1 67775933 67779961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2433 1 824 B3 DNA Binding Superfamily AT5G62000 63.805 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g2433 AUX_IAA 3.5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2433 - - gmx:100803498 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2433 1 67775933 67779961 Ssu1g2433 1 67775933 67779961 ECH
Ssu5g2966 5 76576018 76580919 Ssu1g2433 1 67775933 67779961 PCT
Ssu1g2433 1 67775933 67779961 Ssu6g1497 6 24587582 24589588 PCT