Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2432 ATGATGTCGAGAATAAACAGCGTCCCCTGGATGGACGAGCGAGAAGACGAGAACTCCGCTTCGGCTTCCTGGCCCAGAAACTCCAAGGGCAACAACATGATGACCACCGACACCACCGTTTTCGTCGAAAACACAACAAACCGCGACGACCTGGGTTCCTTCTGCCCCTTCAAACCCATGCTCGAAGTCGACGAAGAATGGTACATCACCAACCACCAAGACATGACCTTCCCCGACCCCGACAGCCTCTTGCTCCACGCCGTCgactcctcctcctcttcctccgTCTTCAACGGCCTCGACCCTTCCTCGTCGCAACTCCACTACTTGCTCCCGCCCAACCCCAAGCCCCCTCTCCTCAACCCCTTCGATATGGGCTTTCTTGAGCCTCAAGCTTCGTCCTCCCTGCCACTCCTCGGCGGCCAGTTAACTCTCCCCAACCTCGCCTCCGACACGCAGTTAACGGTAACGCCCCCTCAGAGCGCCGCCGCCTTCGCGGGCTTTCAGAGCTTCGAAGAGGGTTCCCCCAAGCCTCTGTTTCTGAACCGGTCCAAGATTCTGAGGCCCCTCGAGTCGTTGCCTCCCTCCGGGGCCCAGCCCACGCTGTTTCAGAAGAGGGCCGCGCTTAGGAAAAACATGGCCGCCACGCACTCTGCTGGGGAAGGGAGCGATAAGAAGAGGAAGGACAAGGAGGAGGTCGCGGAGGATGCGAGCTTCGACGGGTCCGGGTTGAACTATGATTCGGATGAGTTAACTGagagtaacaataataacaacgcTAAGGTGGATGAGGTTAAGAATGGTGGGAACAGCTCCAATGGGAACAGCACCGTCACGGGTTTGGATcagaaagggaagaagaagggaATGCCTGCTAAGAATTTGATGGCGGAACGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGCTCAGGTCCGTTGTTCCCAAGATTAGCAAAaTGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCCACGCCTGCGGGTTCTTCACTCACTCCTGCTTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACACTGCCCGGCCGTATCAAAGAAGAACTGTGCCCCAGCTCATTGCCAAGCCCCAACGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGCGAAGGGAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGagCAATGCAAAGAAGGTCAGGATGTTCATCCGGAGCAAATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAATGGCATGATGTAA 1443 0.5198 MMSRINSVPWMDEREDENSASASWPRNSKGNNMMTTDTTVFVENTTNRDDLGSFCPFKPMLEVDEEWYITNHQDMTFPDPDSLLLHAVDSSSSSSVFNGLDPSSSQLHYLLPPNPKPPLLNPFDMGFLEPQASSSLPLLGGQLTLPNLASDTQLTVTPPQSAAAFAGFQSFEEGSPKPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMAATHSAGEGSDKKRKDKEEVAEDASFDGSGLNYDSDELTESNNNNNAKVDEVKNGGNSSNGNSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPPTLPGRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2432 480 Gene3D - 283 353 IPR036638 GO:0046983
Ssu1g2432 480 PANTHER BHLH TRANSCRIPTIONAL FACTOR 89 480 - -
Ssu1g2432 480 SMART finulus 295 344 IPR011598 GO:0046983
Ssu1g2432 480 Coils Coil 328 352 - -
Ssu1g2432 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 356 IPR036638 GO:0046983
Ssu1g2432 480 MobiDBLite consensus disorder prediction 220 237 - -
Ssu1g2432 480 MobiDBLite consensus disorder prediction 245 282 - -
Ssu1g2432 480 MobiDBLite consensus disorder prediction 212 290 - -
Ssu1g2432 480 CDD ACT_UUR-ACR-like 409 469 - -
Ssu1g2432 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Ssu1g2432 480 MobiDBLite consensus disorder prediction 1 32 - -
Ssu1g2432 480 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 89 480 - -
Ssu1g2432 480 CDD bHLH_AtAMS_like 292 357 - -
Ssu1g2432 480 Pfam Helix-loop-helix DNA-binding domain 296 338 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2432 Ssu-Chr1 67771134 67774531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2432 57 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.229 3.34e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2432 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2432 - - vra:106778861 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2432 1 67771134 67774531 Ssu5g2967 5 76581727 76586080 ECH
Ssu1g2432 1 67771134 67774531 Ssu1g2432 1 67771134 67774531 ECH
Ssu5g2967 5 76581727 76586080 Ssu1g2432 1 67771134 67774531 PCT