Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2430 ATGGCAAAAGAGCAGCAAAAACAGGATCCCGCGGCAATCACCAACGCTTGGCAAAACCGAAACCAGGAATTGCAGGCTAAAGGTGAAGTGGAAAAGGAGGAGTCTGAGGCCCCTTCGCCTCTCAGCGTTACTTCCAAGGTTTTGTACATGTTGGGAGACATCACCGCAGGGCCTGCGTTTATGTTTGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAACCATCGCTCCTCTGGCTTCCCGCACCGTCCCTCCACCATGCCTTCTAGCCCAGGAGAATCTATTGAGGATGCAAAAATTGATCAGCAAACAGAAATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAGCTCCTTTTCCTGGGACAGGCTGTCTTCACTTCACCATACTGAACACACTAGCAGCAATGAACATTCTGAGGATGAAATGAACAGAGCTCTTGAgGTAACAGTAAATTCTGGAGGGGTAGTCTTCTTTGCCTTTTTCAATGGCCTTCGAAGTGATGATGCTTCTCCAAAAGAAGCAGCAGCTGttataaagatatcatcttcaAGAATGGCAACACAGTCCGAACGCCTTGGTTATGAATTTGCCAGGTGGTTGGGAGTCCAAACTCCGCAGGCTAGAGTCATCCACAATACCAGTTTAGAGTGGATCCAAATAAAGGAAGCTACAGAAAAAGCAAGAGATGCAGCAAGATCGGCGGGTGATGAAATTGGTGAAATGACATGCACAGAACTTTTGGAAGCACTTGATCTTAGCCGATGTCTCATGTTTATGAGTTACGTGCACGGTTCACCCTTGCTTGAAAGCTCTAGAGCATTTGAAACACAGGAATATGCAGAAAGAACATCAGCAGCCCTTGGCAGGGTAATGATGCTGGATCTTGTCATCAGAAATGAAGATAGACTCCCTTGCCGTCAGCTTAGATGGCGCGGGAACTCTGCAAATTTGTTATTGGCTGAAAAGATTATCTCTGCAAGTACGGATACAATAGGAGAAGCTTTTGATTCTGCAATGAACCGATATGGACCAAGGGTGACTAGGGcacttcaaaaagaaaaaagatcatCTTCGGTGGATAGCAGATTGAATTCTCATAATCCTGGATTGGTATCACAAGCATCTGGTCTTTCAGACATCAAAGAATCATCAATACCCACTGACATGAGCCTTAAAAGTCAAACATCAGAAGGATCGATGCTTACTGACTTTAACATTGTAGCTATTGATTCTGGTGTTCCTCGCCGACCCCCTGTTGGAAAACGTGCAGATGACCATATTAATTATCCTAAGTTGGTCGAGTTACTCCTCAATAGCTCCGAGTTTTCTTCTAATCTATTACATGATATATCTGGAGGGAGATTAGGATGTCCTCCCTCAGAAGACACAAATATAATGACTGATATTCATGCAGGTTATGTAACATCAGTAGTTCACGAGTTCCGTAGTGGTTTTCGTGCTGCTCTCAGGGATATGCAGGGATTCCATATATTCCTACTCACACTTCATCAAAAACTTGATAACTTATTAAGATCATTTATGAATGCTATAAGCAAAATATCATCAGGGGAGTCTGAAAAGGAGGATGCAGTGATTCCTGACTCACCTTCACTGGCTGCTGCTGGTAGTTGTCCCTCTCCATCTATTAAGGAGAGGCTTTCTAATGATATCCATCAAGATTATAGTGATTCAGAATCACAGAGAACTGCTCCAaggtcatcatcatcttcagGTAATAGAGACTGCTGCGACTCTGCTTCTTCTGTGTCCAAAGAAGGTTGGCATGGAAAGCACTCGAAAGGAAGTGGGGAGTCACTTCGTGGTCTCCGCTTGACAGCTAAGCTCCGTGACTTCTATAAATTTGCCAAGGTTGACTCAGAATCCAATAAAGAATTGGAACAATGGAATGAAATGCTTAAAAACGATGCAGTTAAGTTATGCCAGGAGAACAATTTCAACACAGGATTTTTCGAGGGTAGTGATAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTGGAGCATATCCTTGAGAGGATTGCATTGATATCTGAGGCAGCAAATACAGAGAGACCATCCGCTGTTACAAATAATCTGTTCATCGGTGGAGCACTGGCTGCAAGATCTACGTACACGCTGCAACACTTGGGAGTCACACATATTTTGTGTTTGTGTACAAATGAAATTGGTCAGTCAGATACTCAATTTCCCAATCTATTCACATACAAAAACTTCTCTGTAAGATGTACTCTCATGTCTATTTTTAACGCCAATTATTCTATCAACTTATTTGCAGAGGTTTAG 2334 0.422 MAKEQQKQDPAAITNAWQNRNQELQAKGEVEKEESEAPSPLSVTSKVLYMLGDITAGPAFMFAQWLQLVRKRTSNHRSSGFPHRPSTMPSSPGESIEDAKIDQQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEMNRALEVTVNSGGVVFFAFFNGLRSDDASPKEAAAVIKISSSRMATQSERLGYEFARWLGVQTPQARVIHNTSLEWIQIKEATEKARDAARSAGDEIGEMTCTELLEALDLSRCLMFMSYVHGSPLLESSRAFETQEYAERTSAALGRVMMLDLVIRNEDRLPCRQLRWRGNSANLLLAEKIISASTDTIGEAFDSAMNRYGPRVTRALQKEKRSSSVDSRLNSHNPGLVSQASGLSDIKESSIPTDMSLKSQTSEGSMLTDFNIVAIDSGVPRRPPVGKRADDHINYPKLVELLLNSSEFSSNLLHDISGGRLGCPPSEDTNIMTDIHAGYVTSVVHEFRSGFRAALRDMQGFHIFLLTLHQKLDNLLRSFMNAISKISSGESEKEDAVIPDSPSLAAAGSCPSPSIKERLSNDIHQDYSDSESQRTAPRSSSSSGNRDCCDSASSVSKEGWHGKHSKGSGESLRGLRLTAKLRDFYKFAKVDSESNKELEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNTVVDAYELKVRLEHILERIALISEAANTERPSAVTNNLFIGGALAARSTYTLQHLGVTHILCLCTNEIGQSDTQFPNLFTYKNFSVRCTLMSIFNANYSINLFAEV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2430 777 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 16 758 IPR035010 GO:0004721|GO:0009737|GO:0043622
Ssu1g2430 777 Gene3D - 274 392 IPR036940 GO:0016301
Ssu1g2430 777 MobiDBLite consensus disorder prediction 75 93 - -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 75 98 - -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 8 24 - -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 359 386 - -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 574 594 - -
Ssu1g2430 777 Gene3D Protein tyrosine phosphatase superfamily 676 764 IPR029021 -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 532 612 - -
Ssu1g2430 777 SUPERFAMILY Protein kinase-like (PK-like) 64 435 IPR011009 -
Ssu1g2430 777 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 16 758 - -
Ssu1g2430 777 Pfam Actin-fragmin kinase, catalytic 106 421 IPR015275 -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g2430 777 MobiDBLite consensus disorder prediction 369 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2430 Ssu-Chr1 67730712 67736424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2430 33 757 Protein tyrosine phosphatase (PTP) family AT5G23720 62.652 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2430 K14165 - gmx:102661225 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2430 1 67730712 67736424 Ssu1g2430 1 67730712 67736424 ECH