Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2426 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACCCTGCATTCTTCCCCAACACAAACACTCCTTCTTCCCCTCCTCAGTTTCCACTCCCTCAGGAAACATCTTTTAATGTCACAAACCAGGAGACTAGCTGCGTTGACCAAAGCTCCAAGATCACCATAAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGTCCTCAGTCCTCCATGGTAGTGGACAAGCTTGAAACCGGTGAACAGGTCACTCAGAAGGTTACTCCTGtggagaagaaaaggagaacCAGAAATGGATCTTCCTTGAGTAACCCCCAATCCaagGATACTGCAACAGAAGGGAGAAACAAGAAACAAAGGAAGAGCAATGGTGGGGTGAAAGAAGATGACAAgccaaaagaagggaagaaggaTCAGAGAAAATGTCCTGAAGAGCCCCCAGCAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAGAGGGTCAGAAGAGAGAAAATCAGCGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGACGAAATAATTAACTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCATGCTTTATGACTTGGCAACGGACATAGACACCCTCTTGGTTAGACCAGAGAAACTAAACAGCATggcatcaccatcaccactaccatctgTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATGACCCCCACCAACATCTTCCACGCTGCCAGTGACTATCTTTTGGATAATTCAGCTTCATTCTTTCTTCAAGGGCAGAGGTCAAATGTGTTCTCTGAGGAGGTTACCGGTAGTCAGTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTcctttcattaa 1017 0.4258 MAAFSYQYHPFLVDPAFFPNTNTPSSPPQFPLPQETSFNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQVTQKVTPVEKKRRTRNGSSLSNPQSKDTATEGRNKKQRKSNGGVKEDDKPKEGKKDQRKCPEEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMLYDLATDIDTLLVRPEKLNSMASPSPLPSVSHCNSPNQATTFADTTTMTPTNIFHAASDYLLDNSASFFLQGQRSNVFSEEVTGSQFWDAEDQRQKFLHPYGFSNNLCSFH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2426 338 MobiDBLite consensus disorder prediction 43 168 - -
Ssu1g2426 338 Gene3D - 157 231 IPR036638 GO:0046983
Ssu1g2426 338 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 338 - -
Ssu1g2426 338 CDD bHLH_AtBPE_like 150 235 - -
Ssu1g2426 338 SMART finulus 166 216 IPR011598 GO:0046983
Ssu1g2426 338 MobiDBLite consensus disorder prediction 250 269 - -
Ssu1g2426 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 338 IPR024097 GO:0006355
Ssu1g2426 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 227 IPR036638 GO:0046983
Ssu1g2426 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Ssu1g2426 338 MobiDBLite consensus disorder prediction 43 87 - -
Ssu1g2426 338 MobiDBLite consensus disorder prediction 112 168 - -
Ssu1g2426 338 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2426 Ssu-Chr1 67628335 67630254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2426 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 49.609 4.58e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2426 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2426 - - gmx:100806696 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2426 1 67628335 67630254 Ssu1g2426 1 67628335 67630254 ECH